DNA-protein quasi-mapping for rapid differential gene expression analysis in non-model organisms
We provide a quick-and-dirty differential gene expression analysis pipeline for non-model organisms without a reference transcriptome, which directly quasi-maps RNA-seq reads to a reference protein database, avoiding computationally expensive transcriptome assembly.
Authors
- Kyle Christian L. Santiago
- Anish Man Singh Shrestha (ORCID: https://orcid.org/0000-0002-9192-9709)
Institutions
- De La Salle University (PH)
Publication Details
- Journal
- BMC Bioinformatics
- Published
- 2024-10-24
- DOI
- https://doi.org/10.1186/s12859-024-05924-1
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00