Precise grading of non-muscle invasive bladder cancer with multi-scale pyramidal CNN

The grading of non-muscle invasive bladder cancer (NMIBC) continues to face challenges due to subjective interpretations, which affect the assessment of its severity. To address this challenge, we are developing an innovative artificial intelligence (AI) system aimed at objectively grading NMIBC. This system uses a novel convolutional neural network (CNN) architecture called the multi-scale pyramidal pretrained CNN to analyze both local and global pathology markers extracted from digital pathology images. The proposed CNN structure takes as input three levels of patches, ranging from small patches (e.g., <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mrow><mml:mn>128</mml:mn> <mml:mo>×</mml:mo> <mml:mn>128</mml:mn></mml:mrow> </mml:math> ) to the largest size patches ( <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mrow><mml:mn>512</mml:mn> <mml:mo>×</mml:mo> <mml:mn>512</mml:mn></mml:mrow> </mml:math> ). These levels are then fused by random forest (RF) to estimate the severity grade of NMIBC. The optimal patch sizes and other model hyperparameters are determined using a grid search algorithm. For each patch size, the proposed system has been trained on 32K patches (comprising 16K low-grade and 16K high-grade samples) and subsequently tested on 8K patches (consisting of 4K low-grade and 4K high-grade samples), all annotated by two pathologists. Incorporating light and efficient processing, defining new benchmarks in the application of AI to histopathology, the ShuffleNet-based AI system achieved notable metrics on the testing data, including 94.25% ± 0.70% accuracy, 94.47% ± 0.93% sensitivity, 94.03% ± 0.95% specificity, and a 94.29% ± 0.70% F1-score. These results highlight its superior performance over traditional models like ResNet-18. The proposed system's robustness in accurately grading pathology demonstrates its potential as an advanced AI tool for diagnosing human diseases in the domain of digital pathology.

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Publication Details

Journal
Scientific Reports
Published
2024-10-24
DOI
https://doi.org/10.1038/s41598-024-77101-6
Citations
9
Primary Topic
Bladder and Urothelial Cancer Treatments
Type
article
Field-Weighted Citation Impact
5.15

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article

Precise grading of non-muscle invasive bladder cancer with multi-scale pyramidal CNN

Mohamed Shehata, Ali H. Mahmoud, Khadiga M. Ali, Mohammed Ghazal et al.
9 citations
Scientific Reports
Bladder and Urothelial Cancer Treatments
5.15
article

Precise grading of non-muscle invasive bladder cancer with multi-scale pyramidal CNN

Mohamed Shehata, Ali H. Mahmoud, Khadiga M. Ali, Mohammed Ghazal, Osama Ezzat, Norah Saleh Alghamdi, Aya T. Shalata, Sherry M. Khater, Ahmed Alksas, Ayman El‐Baz, Eman M. El-Gendy, Mohamed A. Mohamed, Dibson Gondim
article en
9 citations

Abstract

The grading of non-muscle invasive bladder cancer (NMIBC) continues to face challenges due to subjective interpretations, which affect the assessment of its severity. To address this challenge, we are developing an innovative artificial intelligence (AI) system aimed at objectively grading NMIBC. This system uses a novel convolutional neural network (CNN) architecture called the multi-scale pyramidal pretrained CNN to analyze both local and global pathology markers extracted from digital pathology images. The proposed CNN structure takes as input three levels of patches, ranging from small patches (e.g., <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mrow><mml:mn>128</mml:mn> <mml:mo>×</mml:mo> <mml:mn>128</mml:mn></mml:mrow> </mml:math> ) to the largest size patches ( <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mrow><mml:mn>512</mml:mn> <mml:mo>×</mml:mo> <mml:mn>512</mml:mn></mml:mrow> </mml:math> ). These levels are then fused by random forest (RF) to estimate the severity grade of NMIBC. The optimal patch sizes and other model hyperparameters are determined using a grid search algorithm. For each patch size, the proposed system has been trained on 32K patches (comprising 16K low-grade and 16K high-grade samples) and subsequently tested on 8K patches (consisting of 4K low-grade and 4K high-grade samples), all annotated by two pathologists. Incorporating light and efficient processing, defining new benchmarks in the application of AI to histopathology, the ShuffleNet-based AI system achieved notable metrics on the testing data, including 94.25% ± 0.70% accuracy, 94.47% ± 0.93% sensitivity, 94.03% ± 0.95% specificity, and a 94.29% ± 0.70% F1-score. These results highlight its superior performance over traditional models like ResNet-18. The proposed system's robustness in accurately grading pathology demonstrates its potential as an advanced AI tool for diagnosing human diseases in the domain of digital pathology.

Scientific ReportsVol. 14(1)
Princess Nourah bint Abdulrahman University (SA), Abu Dhabi University (AE), University of Louisville (US), Mansoura University (EG)
Princess Nourah Bint Abdulrahman University
Zero hunger
Openalex Percentile: Top 4%
Bladder and Urothelial Cancer Treatments
5.15
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