Repeated shifts out of tropical climates preceded by whole genome duplication

While flowering plants have diversified in virtually every terrestrial clime, climate constrains the distribution of individual lineages. Overcoming climatic constraints may be associated with diverse evolutionary phenomena including whole genome duplication (WGD), gene-tree conflict, and life-history changes. Climatic shifts may also have facilitated increases in flowering plant diversification rates. We investigate climatic shifts in the flowering plant order Ericales, which consists of c. 14 000 species with diverse climatic tolerances. We estimate phylogenetic trees from transcriptomic data, 64 chloroplast loci, and Angiosperms353 nuclear loci that, respectively, incorporate 147, 4508, and 2870 Ericales species. We use these phylogenetic trees to analyse how climatic shifts are associated with WGD, gene-tree conflict, life-history, and diversification rates. Early branches in the phylogenetic trees are extremely short, and have high levels of gene-tree conflict and at least one WGD. On lineages descended from these early branches, there is a significant association between climatic shifts (primarily out of tropical climates), further WGDs, and life-history. Extremely short early branches, and their associated gene-tree conflict and WGDs, appear to underpin the explosive origin of numerous species rich Ericales clades. The evolution of diverse climatic tolerances in these species rich clades is tightly associated with WGD and life-history.

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Publication Details

Journal
New Phytologist
Published
2024-10-23
DOI
https://doi.org/10.1111/nph.20200
Citations
10
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
2.34

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article

Repeated shifts out of tropical climates preceded by whole genome duplication

Pamela S. Soltis, Stephen A. Smith, Drew A. Larson, William N. Weaver et al.
10 citations
New Phytologist
Genomics and Phylogenetic Studies
2.34
article

Repeated shifts out of tropical climates preceded by whole genome duplication

Pamela S. Soltis, Stephen A. Smith, Drew A. Larson, William N. Weaver, André S. Chanderbali, Tom Carruthers, Christopher W. Dick, Peter W. Fritsch, Deise J.P. Gonçalves, Pan Li, Douglas E. Soltis
article en
10 citations

Abstract

While flowering plants have diversified in virtually every terrestrial clime, climate constrains the distribution of individual lineages. Overcoming climatic constraints may be associated with diverse evolutionary phenomena including whole genome duplication (WGD), gene-tree conflict, and life-history changes. Climatic shifts may also have facilitated increases in flowering plant diversification rates. We investigate climatic shifts in the flowering plant order Ericales, which consists of c. 14 000 species with diverse climatic tolerances. We estimate phylogenetic trees from transcriptomic data, 64 chloroplast loci, and Angiosperms353 nuclear loci that, respectively, incorporate 147, 4508, and 2870 Ericales species. We use these phylogenetic trees to analyse how climatic shifts are associated with WGD, gene-tree conflict, life-history, and diversification rates. Early branches in the phylogenetic trees are extremely short, and have high levels of gene-tree conflict and at least one WGD. On lineages descended from these early branches, there is a significant association between climatic shifts (primarily out of tropical climates), further WGDs, and life-history. Extremely short early branches, and their associated gene-tree conflict and WGDs, appear to underpin the explosive origin of numerous species rich Ericales clades. The evolution of diverse climatic tolerances in these species rich clades is tightly associated with WGD and life-history.

New PhytologistVol. 244(6)
Botanical Research Institute of Texas (US), Florida Museum of Natural History (US), University of Michigan (US), University of Florida (US), Indiana University Bloomington (US), Zhejiang University (CN)
National Science Foundation, Directorate for Biological Sciences
Climate action
Openalex Percentile: Top 11%
Genomics and Phylogenetic Studies
2.34
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