AI-Generated Annotations Dataset for Diverse Cancer Radiology Collections in NCI Image Data Commons

The National Cancer Institute (NCI) Image Data Commons (IDC) offers publicly available cancer radiology collections for cloud computing, crucial for developing advanced imaging tools and algorithms. Despite their potential, these collections are minimally annotated; only 4% of DICOM studies in collections considered in the project had existing segmentation annotations. This project increases the quantity of segmentations in various IDC collections. We produced high-quality, AI-generated imaging annotations dataset of tissues, organs, and/or cancers for 11 distinct IDC image collections. These collections contain images from a variety of modalities, including computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). The collections cover various body parts, such as the chest, breast, kidneys, prostate, and liver. A portion of the AI annotations were reviewed and corrected by a radiologist to assess the performance of the AI models. Both the AI's and the radiologist's annotations were encoded in conformance to the Digital Imaging and Communications in Medicine (DICOM) standard, allowing for seamless integration into the IDC collections as third-party analysis collections. All the models, images and annotations are publicly accessible.

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Publication Details

Journal
Scientific Data
Published
2024-10-23
DOI
https://doi.org/10.1038/s41597-024-03977-8
Citations
6
Primary Topic
Radiomics and Machine Learning in Medical Imaging
Type
article
Field-Weighted Citation Impact
2.43

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article

AI-Generated Annotations Dataset for Diverse Cancer Radiology Collections in NCI Image Data Commons

Gowtham Krishnan Murugesan, David Clunie, Keyvan Farahani, Andriy Fedorov et al.
6 citations
Scientific Data
Radiomics and Machine Learning in Medical Imaging
2.43
article

AI-Generated Annotations Dataset for Diverse Cancer Radiology Collections in NCI Image Data Commons

Gowtham Krishnan Murugesan, David Clunie, Keyvan Farahani, Andriy Fedorov, Fatima Memon, Ulrike Wagner, Linmin Pei, Diana McCrumb, Rahul Soni, Mariam Aboian, Jeff Van Oss, Stephen Moore, Tej Verma
article en
6 citations

Abstract

The National Cancer Institute (NCI) Image Data Commons (IDC) offers publicly available cancer radiology collections for cloud computing, crucial for developing advanced imaging tools and algorithms. Despite their potential, these collections are minimally annotated; only 4% of DICOM studies in collections considered in the project had existing segmentation annotations. This project increases the quantity of segmentations in various IDC collections. We produced high-quality, AI-generated imaging annotations dataset of tissues, organs, and/or cancers for 11 distinct IDC image collections. These collections contain images from a variety of modalities, including computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography (PET). The collections cover various body parts, such as the chest, breast, kidneys, prostate, and liver. A portion of the AI annotations were reviewed and corrected by a radiologist to assess the performance of the AI models. Both the AI's and the radiologist's annotations were encoded in conformance to the Digital Imaging and Communications in Medicine (DICOM) standard, allowing for seamless integration into the IDC collections as third-party analysis collections. All the models, images and annotations are publicly accessible.

Scientific DataVol. 11(1)
Brigham and Women's Hospital (US), Harvard University (US), Spectrum Health (US), Yale University (US), Frederick National Laboratory for Cancer Research (US)
U.S. Department of Health and Human Services, National Institutes of Health, National Cancer Institute
Industry, innovation and infrastructure, Partnerships for the goals
Openalex Percentile: Top 11%
Radiomics and Machine Learning in Medical Imaging
2.43
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