Environment- and Conformation-Induced Frequency Shifts of C–D Vibrational Stark Probes in NAD(P)H Cofactors

NAD(P)H cofactors are found in all forms of life and are essential for electron and hydrogen atom transfer. The linear response of a carbon-deuterium (C-D) vibration based on the vibrational Stark effect can facilitate measurements of electric fields for critical biological reactions including cofactor-mediated hydride transfer. We find both inter- and intramolecular electric fields influence the C-D frequency in NAD(P)H and nicotinamide-like models where the reactive C4-hydrogen has been deuterated. Hence, the C-D frequency can report both environmental electrostatics and conformational changes of the nicotinamide ring. Conformation-dependent effects are mediated through space as electrostatic effects, rather than through-bond. A Stark tuning rate of ∼0.57 cm<sup>-1</sup>/(MV/cm) was determined using both experimental and computational approaches, including vibrational solvatochromism, molecular dynamics simulations, and <i>in silico</i> Stark calculations. The vibrational probe's Stark tuning rate is shown to be robust and suitable for measuring fields along hydride transfer reaction coordinates in enzymes.

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Publication Details

Journal
The Journal of Physical Chemistry Letters
Published
2024-10-22
DOI
https://doi.org/10.1021/acs.jpclett.4c02497
Citations
1
Primary Topic
Mass Spectrometry Techniques and Applications
Type
article
Field-Weighted Citation Impact
0.24

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article

Environment- and Conformation-Induced Frequency Shifts of C–D Vibrational Stark Probes in NAD(P)H Cofactors

Srijit Mukherjee, Steven G. Boxer, Steven D.E. Fried, Yuezhi Mao
1 citations
The Journal of Physical Chemistry Letters
Mass Spectrometry Techniques and Applications
0.24
article

Environment- and Conformation-Induced Frequency Shifts of C–D Vibrational Stark Probes in NAD(P)H Cofactors

Srijit Mukherjee, Steven G. Boxer, Steven D.E. Fried, Yuezhi Mao
article en
1 citations

Abstract

NAD(P)H cofactors are found in all forms of life and are essential for electron and hydrogen atom transfer. The linear response of a carbon-deuterium (C-D) vibration based on the vibrational Stark effect can facilitate measurements of electric fields for critical biological reactions including cofactor-mediated hydride transfer. We find both inter- and intramolecular electric fields influence the C-D frequency in NAD(P)H and nicotinamide-like models where the reactive C4-hydrogen has been deuterated. Hence, the C-D frequency can report both environmental electrostatics and conformational changes of the nicotinamide ring. Conformation-dependent effects are mediated through space as electrostatic effects, rather than through-bond. A Stark tuning rate of ∼0.57 cm<sup>-1</sup>/(MV/cm) was determined using both experimental and computational approaches, including vibrational solvatochromism, molecular dynamics simulations, and <i>in silico</i> Stark calculations. The vibrational probe's Stark tuning rate is shown to be robust and suitable for measuring fields along hydride transfer reaction coordinates in enzymes.

The Journal of Physical Chemistry LettersVol. 15(43)
San Diego State University (US), Stanford University (US)
National Science Foundation, Stanford University, San Diego State University, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung, Peking University, National Institutes of Health, Stanford Research Computing Center, Stanford University, National Institute of General Medical Sciences, Division of Electrical, Communications and Cyber Systems
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Mass Spectrometry Techniques and Applications
0.24
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