Complete genome sequence of Paracidovorax avenae causing red stripe in sugarcane

Genome assembly data from second- and third-generation sequencing revealed that the entire genomic sequence of Pa CNGX08 strain causing red stripe in sugarcane, consisted of a 5,625,582 bp circular chromosome with a GC content of 68.97%. In total, 4,915 protein-coding genes were annotated. Additionally, 9 ribosomal RNAs and 52 transfer RNAs were identified. This genomic resource will facilitate the genome-based taxonomic classification of the genus Paracidovorax and the exploration of pathogenic mechanisms underlying sugarcane red stripe disease caused by Pa.

Authors

Institutions

Publication Details

Journal
BMC Genomic Data
Published
2024-10-22
DOI
https://doi.org/10.1186/s12863-024-01271-5
Citations
1
Primary Topic
Plant Pathogenic Bacteria Studies
Type
article
Field-Weighted Citation Impact
0.60

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Complete genome sequence of Paracidovorax avenae causing red stripe in sugarcane

San‐Ji Gao, Canlin Zheng, Jianying Zhao, Wei-Ting Liu et al.
1 citations
BMC Genomic Data
Plant Pathogenic Bacteria Studies
0.60
article

Complete genome sequence of Paracidovorax avenae causing red stripe in sugarcane

San‐Ji Gao, Canlin Zheng, Jianying Zhao, Wei-Ting Liu, Quan Xie, Hongyu Duan
article en
1 citations

Abstract

Genome assembly data from second- and third-generation sequencing revealed that the entire genomic sequence of Pa CNGX08 strain causing red stripe in sugarcane, consisted of a 5,625,582 bp circular chromosome with a GC content of 68.97%. In total, 4,915 protein-coding genes were annotated. Additionally, 9 ribosomal RNAs and 52 transfer RNAs were identified. This genomic resource will facilitate the genome-based taxonomic classification of the genus Paracidovorax and the exploration of pathogenic mechanisms underlying sugarcane red stripe disease caused by Pa.

BMC Genomic DataVol. 25(1)
Fujian Agriculture and Forestry University (CN)
Earmarked Fund for China Agriculture Research System
Zero hunger
Openalex Percentile: Top 21%
Plant Pathogenic Bacteria Studies
0.60
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.