FSscore: A Personalized Machine Learning‐Based Synthetic Feasibility Score

Abstract Determining whether a molecule can be synthesized is crucial in chemistry and drug discovery, as it guides experimental prioritization and molecule ranking in de novo design tasks. Existing scoring approaches to assess synthetic feasibility struggle to extrapolate to new chemical spaces or fail to discriminate based on subtle differences such as chirality. This work addresses these limitations by introducing the Focused Synthesizability score (FSscore), which uses machine learning to rank structures based on their relative ease of synthesis. First, a baseline trained on an extensive set of reactant‐product pairs is established, which is then refined with expert human feedback tailored to specific chemical spaces. This targeted fine‐tuning improves performance on these chemical scopes, enabling more accurate differentiation between molecules that are hard and easy to synthesize. The FSscore showcases how a human‐in‐the‐loop framework can be utilized to optimize the assessment of synthetic feasibility for various chemical applications.

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Publication Details

Journal
Chemistry - Methods
Published
2024-10-18
DOI
https://doi.org/10.1002/cmtd.202400024
Citations
12
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
4.34

Funders

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article

FSscore: A Personalized Machine Learning‐Based Synthetic Feasibility Score

Rebecca M. Neeser, Philippe Schwaller, Bruno E. Correia
12 citations
Chemistry - Methods
Computational Drug Discovery Methods
4.34
article

FSscore: A Personalized Machine Learning‐Based Synthetic Feasibility Score

Rebecca M. Neeser, Philippe Schwaller, Bruno E. Correia
article en
12 citations

Abstract

Abstract Determining whether a molecule can be synthesized is crucial in chemistry and drug discovery, as it guides experimental prioritization and molecule ranking in de novo design tasks. Existing scoring approaches to assess synthetic feasibility struggle to extrapolate to new chemical spaces or fail to discriminate based on subtle differences such as chirality. This work addresses these limitations by introducing the Focused Synthesizability score (FSscore), which uses machine learning to rank structures based on their relative ease of synthesis. First, a baseline trained on an extensive set of reactant‐product pairs is established, which is then refined with expert human feedback tailored to specific chemical spaces. This targeted fine‐tuning improves performance on these chemical scopes, enabling more accurate differentiation between molecules that are hard and easy to synthesize. The FSscore showcases how a human‐in‐the‐loop framework can be utilized to optimize the assessment of synthetic feasibility for various chemical applications.

Chemistry - MethodsVol. 4(11)
École Polytechnique Fédérale de Lausanne (CH)
National Science Foundation, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
Reduced inequalities
Openalex Percentile: Top 5%
Computational Drug Discovery Methods
4.34
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