Role of Tyrosine Phosphorylation in PTP–PEST

We study the influence of tyrosine phosphorylation on PTP-PEST, a cytosolic protein tyrosine phosphatase. Utilizing a combination of experimental data and computational modeling, specific tyrosine sites, notably, Y64 and Y88, are identified for potential phosphorylation. Phosphorylation at these sites affects loop dynamics near the catalytic site, altering interactions among key residues and modifying the size of the binding pocket. This, in turn, impacts substrate binding, as indicated by changes in the binding energy. Our findings provide insights into the structural and functional consequences of tyrosine phosphorylation on PTP-PEST, enhancing our understanding of its effects on substrate binding and catalytic conformation.

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Publication Details

Journal
The Journal of Physical Chemistry B
Published
2024-10-18
DOI
https://doi.org/10.1021/acs.jpcb.4c04047
Primary Topic
Protein Tyrosine Phosphatases
Type
article
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article

Role of Tyrosine Phosphorylation in PTP–PEST

Amrutha Manikandan, S. Srinivasan, Madhulika Dixit, N. Manoj et al.
The Journal of Physical Chemistry B
Protein Tyrosine Phosphatases
article

Role of Tyrosine Phosphorylation in PTP–PEST

Amrutha Manikandan, S. Srinivasan, Madhulika Dixit, N. Manoj, Satyavani Vemparala
article en

Abstract

We study the influence of tyrosine phosphorylation on PTP-PEST, a cytosolic protein tyrosine phosphatase. Utilizing a combination of experimental data and computational modeling, specific tyrosine sites, notably, Y64 and Y88, are identified for potential phosphorylation. Phosphorylation at these sites affects loop dynamics near the catalytic site, altering interactions among key residues and modifying the size of the binding pocket. This, in turn, impacts substrate binding, as indicated by changes in the binding energy. Our findings provide insights into the structural and functional consequences of tyrosine phosphorylation on PTP-PEST, enhancing our understanding of its effects on substrate binding and catalytic conformation.

The Journal of Physical Chemistry BVol. 128(43)
Homi Bhabha National Institute (IN), Indian Institute of Technology Madras (IN), Institute of Mathematical Sciences (IN)
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Openalex Percentile: Top 84%
Protein Tyrosine Phosphatases
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