Molecule discovery and optimization via evolutionary swarm intelligence

Since the advent of computational analysis and visualization of chemical compounds, Computer-Aided Drug Design has made significant contributions to drug discovery. Recently, de novo drug design and molecular optimization have garnered considerable attention. Traditional optimization methods often struggle with the discrete nature of molecular space, but evolutionary computations have demonstrated their versatility across various optimization problems, regardless of the nature of the objective functions. This paper introduces a novel evolutionary algorithm, the Swarm Intelligence-Based Method for Single-Objective Molecular Optimization. Several experiments were conducted to showcase the efficiency of the proposed method, which identifies near-optimal solutions in a remarkably short time. The results were then compared with those of other state-of-the-art methods in the field.

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Publication Details

Journal
Scientific Reports
Published
2024-10-18
DOI
https://doi.org/10.1038/s41598-024-75515-w
Citations
3
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
1.08

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article

Molecule discovery and optimization via evolutionary swarm intelligence

Hsin‐Ping Liu, Frederick Kin Hing Phoa, Saykat Dutta
3 citations
Scientific Reports
Computational Drug Discovery Methods
1.08
article

Molecule discovery and optimization via evolutionary swarm intelligence

Hsin‐Ping Liu, Frederick Kin Hing Phoa, Saykat Dutta
article en
3 citations

Abstract

Since the advent of computational analysis and visualization of chemical compounds, Computer-Aided Drug Design has made significant contributions to drug discovery. Recently, de novo drug design and molecular optimization have garnered considerable attention. Traditional optimization methods often struggle with the discrete nature of molecular space, but evolutionary computations have demonstrated their versatility across various optimization problems, regardless of the nature of the objective functions. This paper introduces a novel evolutionary algorithm, the Swarm Intelligence-Based Method for Single-Objective Molecular Optimization. Several experiments were conducted to showcase the efficiency of the proposed method, which identifies near-optimal solutions in a remarkably short time. The results were then compared with those of other state-of-the-art methods in the field.

Scientific ReportsVol. 14(1)
National Taiwan University (TW), Institute of Statistical Science, Academia Sinica (TW)
Academia Sinica, National Taiwan University, National Science and Technology Council
Openalex Percentile: Top 20%
Computational Drug Discovery Methods
1.08
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