Committor Guided Estimates of Molecular Transition Rates

The probability that a configuration of a physical system reacts, or transitions from one metastable state to another, is quantified by the committor function. This function contains richly detailed mechanistic information about transition pathways, but a full parametrization of the committor requires the construction of a high-dimensional function, a generically challenging task. Recent efforts to leverage neural networks as a means to solve high-dimensional partial differential equations, often called "physics-informed" machine learning, have brought the committor into computational reach. Here, we build on the semigroup approach to learning the committor and assess its utility for predicting dynamical quantities such as transition rates. We show that a careful reframing of the objective function and improved adaptive sampling strategies provide highly accurate representations of the committor. Furthermore, by directly applying the Hill relation, we show that these committors provide accurate transition rates for molecular systems.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2024-10-18
DOI
https://doi.org/10.1021/acs.jctc.4c00997
Citations
6
Primary Topic
Advanced Thermodynamics and Statistical Mechanics
Type
article
Field-Weighted Citation Impact
1.69
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article

Committor Guided Estimates of Molecular Transition Rates

Grant M. Rotskoff, Andrew Mitchell
6 citations
Journal of Chemical Theory and Computation
Advanced Thermodynamics and Statistical Mechanics
1.69
article

Committor Guided Estimates of Molecular Transition Rates

Grant M. Rotskoff, Andrew Mitchell
article en
6 citations

Abstract

The probability that a configuration of a physical system reacts, or transitions from one metastable state to another, is quantified by the committor function. This function contains richly detailed mechanistic information about transition pathways, but a full parametrization of the committor requires the construction of a high-dimensional function, a generically challenging task. Recent efforts to leverage neural networks as a means to solve high-dimensional partial differential equations, often called "physics-informed" machine learning, have brought the committor into computational reach. Here, we build on the semigroup approach to learning the committor and assess its utility for predicting dynamical quantities such as transition rates. We show that a careful reframing of the objective function and improved adaptive sampling strategies provide highly accurate representations of the committor. Furthermore, by directly applying the Hill relation, we show that these committors provide accurate transition rates for molecular systems.

Journal of Chemical Theory and ComputationVol. 20(21)
Stanford University (US)
Openalex Percentile: Top 16%
Advanced Thermodynamics and Statistical Mechanics
1.69
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Committor Guided Estimates of Molecular Transition Rates — Grant M. Rotskoff, Andrew Mitchell · Journal of Chemical Theory and Computation (2024) | TGRS Research Map | TGRS