Discovery and Structural Analysis of Metabolites of Vitamin D<sub>3</sub> Lactones

25-Hydroxyvitamin D<sub>3</sub>-23,26-lactone (1) and 1α,25-dihydroxyvitamin D<sub>3</sub>-23,26-lactone (2) have long been considered as among the end metabolites of vitamin D<sub>3</sub>. Recently, however, we found that these lactones exhibit biological activity related to the β-oxidation of fatty acids. We hypothesized that a metabolic pathway might exist to inactivate their physiological activity. Here, by means of metabolic experiments with a variety of cytochrome P450 (CYP) enzymes, we show that CYP3A4 metabolizes the lactones. The metabolites were presumed to be hydroxylated at C4 based on the previous reports showing that metabolism of 25-hydroxyvitamin D<sub>3</sub> by CYP3A4 along with the current LC-MS analysis. To confirm this, we chemically synthesized 4α,25(OH)<sub>2</sub>D<sub>3</sub>-23,26-lactone (3), 4β,25(OH)<sub>2</sub>D<sub>3</sub>-23,26-lactone (4), 1α,4α,25(OH)<sub>3</sub>D<sub>3</sub>-23,26-lactone (5), and 1α,4β,25(OH)<sub>3</sub>D<sub>3</sub>-23,26-lactone (6). HPLC analysis using these authentic compounds as standards revealed that 1 was metabolized to 3 and 4, while 2 was metabolized exclusively to 6 by CYP3A4. Docking studies suggest that the hydroxyl group at C1 in 2 forms hydrogen bonds with Ser119 and Arg212 of CYP3A4, contributing to the fixation of C4β on heme iron in the CYP, thereby resulting in stereoselective hydroxylation at C4.

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Journal
Chemical and Pharmaceutical Bulletin
Published
2024-10-17
DOI
https://doi.org/10.1248/cpb.c24-00495
Primary Topic
Computational Drug Discovery Methods
Type
article
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0.00

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article

Discovery and Structural Analysis of Metabolites of Vitamin D3 Lactones

Minami Odagi, Takatsugu Hirokawa, Kaori Yasuda, Toshiyuki Sakaki et al.
Chemical and Pharmaceutical Bulletin
Computational Drug Discovery Methods
article

Discovery and Structural Analysis of Metabolites of Vitamin D3 Lactones

Minami Odagi, Takatsugu Hirokawa, Kaori Yasuda, Toshiyuki Sakaki, Rino Tsutsumi, Kazuto Iijima, Ryota Sakamoto, Kazuo Nagasawa, Naoto Nakaya
article en

Abstract

25-Hydroxyvitamin D<sub>3</sub>-23,26-lactone (1) and 1α,25-dihydroxyvitamin D<sub>3</sub>-23,26-lactone (2) have long been considered as among the end metabolites of vitamin D<sub>3</sub>. Recently, however, we found that these lactones exhibit biological activity related to the β-oxidation of fatty acids. We hypothesized that a metabolic pathway might exist to inactivate their physiological activity. Here, by means of metabolic experiments with a variety of cytochrome P450 (CYP) enzymes, we show that CYP3A4 metabolizes the lactones. The metabolites were presumed to be hydroxylated at C4 based on the previous reports showing that metabolism of 25-hydroxyvitamin D<sub>3</sub> by CYP3A4 along with the current LC-MS analysis. To confirm this, we chemically synthesized 4α,25(OH)<sub>2</sub>D<sub>3</sub>-23,26-lactone (3), 4β,25(OH)<sub>2</sub>D<sub>3</sub>-23,26-lactone (4), 1α,4α,25(OH)<sub>3</sub>D<sub>3</sub>-23,26-lactone (5), and 1α,4β,25(OH)<sub>3</sub>D<sub>3</sub>-23,26-lactone (6). HPLC analysis using these authentic compounds as standards revealed that 1 was metabolized to 3 and 4, while 2 was metabolized exclusively to 6 by CYP3A4. Docking studies suggest that the hydroxyl group at C1 in 2 forms hydrogen bonds with Ser119 and Arg212 of CYP3A4, contributing to the fixation of C4β on heme iron in the CYP, thereby resulting in stereoselective hydroxylation at C4.

Chemical and Pharmaceutical BulletinVol. 72(10)
Tokyo University of Agriculture (JP), University of Tsukuba (JP), Toyama Prefectural University (JP), Tokyo University of Agriculture and Technology (JP)
Japan Society for the Promotion of Science
Zero hunger
Openalex Percentile: Top 78%
Computational Drug Discovery Methods
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