NMR Coupling Constants, Karplus Equations, and Adjusted MD Statistics: Detecting Diagnostic Torsion Angles for the Solution Geometry of 6‐[α‐ <scp>d</scp> ‐Mannopyranosyl]‐ <scp>d</scp> ‐Mannopyranose (Mannobiose)

The quantitative solution conformations of 2-(hydroxymethyl)-tetrahydropyran, α-methyl-d-mannopyranoside, and 6-[α-d-mannopyranosyl]-d-mannopyranose (mannobiose) are described. Parametrized Karplus equations for redundant spin pairs across the terminal ω-torsion and the glycosidic ω-torsion for mannobiose are developed, including ω/θ-hypersurfaces for the terminal hydroxymethylene group. Experimental NMR data, algorithmic spectral simulation (clustered Hamiltonian method), molecular dynamics (MD) simulations (GLYCAM06), energy minimizations by DFT, and adjusted torsion angle populations weighted over the Karplus-type equations are used. We demonstrate that spectral simulation is a powerful tool in the refinement of initial J values obtained from static GAIO DFT calculations. We also show that only as few as one of multiple redundant torsions can be diagnostic for conformational analysis of the disaccharide.

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Publication Details

Journal
Magnetic Resonance in Chemistry
Published
2024-10-16
DOI
https://doi.org/10.1002/mrc.5483
Citations
1
Primary Topic
Carbohydrate Chemistry and Synthesis
Type
article
Field-Weighted Citation Impact
0.25

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article

NMR Coupling Constants, Karplus Equations, and Adjusted MD Statistics: Detecting Diagnostic Torsion Angles for the Solution Geometry of 6‐[α‐ d ‐Mannopyranosyl]‐ d ‐Mannopyranose (Mannobiose)

Amelia Watson, Ei Thu Aung, Andreas H. Franz, Kendall S. Bromley et al.
1 citations
Magnetic Resonance in Chemistry
Carbohydrate Chemistry and Synthesis
0.25
article

NMR Coupling Constants, Karplus Equations, and Adjusted MD Statistics: Detecting Diagnostic Torsion Angles for the Solution Geometry of 6‐[α‐ d ‐Mannopyranosyl]‐ d ‐Mannopyranose (Mannobiose)

Amelia Watson, Ei Thu Aung, Andreas H. Franz, Kendall S. Bromley, Q. L. Stephen, Hana M. Rosenblatt
article en
1 citations

Abstract

The quantitative solution conformations of 2-(hydroxymethyl)-tetrahydropyran, α-methyl-d-mannopyranoside, and 6-[α-d-mannopyranosyl]-d-mannopyranose (mannobiose) are described. Parametrized Karplus equations for redundant spin pairs across the terminal ω-torsion and the glycosidic ω-torsion for mannobiose are developed, including ω/θ-hypersurfaces for the terminal hydroxymethylene group. Experimental NMR data, algorithmic spectral simulation (clustered Hamiltonian method), molecular dynamics (MD) simulations (GLYCAM06), energy minimizations by DFT, and adjusted torsion angle populations weighted over the Karplus-type equations are used. We demonstrate that spectral simulation is a powerful tool in the refinement of initial J values obtained from static GAIO DFT calculations. We also show that only as few as one of multiple redundant torsions can be diagnostic for conformational analysis of the disaccharide.

Magnetic Resonance in ChemistryVol. 63(1)
University of the Pacific (US)
National Science Foundation, Division of Chemistry
Affordable and clean energy
Openalex Percentile: Top 47%
Carbohydrate Chemistry and Synthesis
0.25
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NMR Coupling Constants, Karplus Equations, and Adjusted MD Statistics: Detecting Diagnostic Torsion Angles for the Solution Geometry of 6‐[α‐ <scp>d</scp> ‐Mannopyranosyl]‐ <scp>d</scp> ‐Mannopyranose (Mannobiose) — Amelia Watson, Ei Thu Aung, et al. · Magnetic Resonance in Chemistry (2024) | TGRS Research Map | TGRS