A framework for a low‐cost system of automated gate control in assays of spatial cognition in fishes

Automation of experimental setups is a promising direction in behavioral research because it can facilitate the acquisition of data while increasing its repeatability and reliability. For example, research in spatial cognition can benefit from automated control by systematic manipulation of sensory cues and more efficient execution of training procedures. However, commercial solutions are often costly, restricted to specific platforms, and mainly focused on the automation of data acquisition, stimulus presentation, and reward delivery. Animal welfare considerations as well as experimental demands may require automating the access of an animal or animals to the experimental arena. Here, we provide and test a low-cost, versatile Raspberry Pi-based solution for such use cases. We provide four application scenarios of varying complexities, based on our research of spatial orientation and navigation in weakly electric fish, with step-by-step protocols for the control of gates in the experimental setups. This easy-to-implement, platform-independent approach can be adapted to various experimental needs, including closed-loop as well as field experiments. As such, it can contribute to the optimization and standardization of experiments in a variety of species, thereby enhancing the comparability of data.

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Publication Details

Journal
Journal of Fish Biology
Published
2024-10-17
DOI
https://doi.org/10.1111/jfb.15958
Citations
2
Primary Topic
Fish biology, ecology, and behavior
Type
article
Field-Weighted Citation Impact
1.38

Funders

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article

A framework for a low‐cost system of automated gate control in assays of spatial cognition in fishes

Valerie Lucks, Maria Paula Arteaga Avendaño, Jacob Engelmann, Jens Theine
2 citations
Journal of Fish Biology
Fish biology, ecology, and behavior
1.38
article

A framework for a low‐cost system of automated gate control in assays of spatial cognition in fishes

Valerie Lucks, Maria Paula Arteaga Avendaño, Jacob Engelmann, Jens Theine
article en
2 citations

Abstract

Automation of experimental setups is a promising direction in behavioral research because it can facilitate the acquisition of data while increasing its repeatability and reliability. For example, research in spatial cognition can benefit from automated control by systematic manipulation of sensory cues and more efficient execution of training procedures. However, commercial solutions are often costly, restricted to specific platforms, and mainly focused on the automation of data acquisition, stimulus presentation, and reward delivery. Animal welfare considerations as well as experimental demands may require automating the access of an animal or animals to the experimental arena. Here, we provide and test a low-cost, versatile Raspberry Pi-based solution for such use cases. We provide four application scenarios of varying complexities, based on our research of spatial orientation and navigation in weakly electric fish, with step-by-step protocols for the control of gates in the experimental setups. This easy-to-implement, platform-independent approach can be adapted to various experimental needs, including closed-loop as well as field experiments. As such, it can contribute to the optimization and standardization of experiments in a variety of species, thereby enhancing the comparability of data.

Journal of Fish BiologyVol. 107(4)
Bielefeld University (DE)
Human Frontier Science Program, Universität Bielefeld
Life below water
Openalex Percentile: Top 18%
Fish biology, ecology, and behavior
1.38
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A framework for a low‐cost system of automated gate control in assays of spatial cognition in fishes — Valerie Lucks, Maria Paula Arteaga Avendaño, et al. · Journal of Fish Biology (2024) | TGRS Research Map | TGRS