Probing the performance of <scp>DFT</scp> in the structural characterization of [<scp>FeFe</scp>] hydrogenase models

In this work, a series of DFT and DFT-D methods is combined with double-ζ basis sets to benchmark their performance in predicting the structures of five newly synthesized hexacarbonyl diiron complexes with a bridging ligand featuring a μ-S<sub>2</sub>C<sub>3</sub> motif in a ring-containing unit functionalized with aromatic groups. Such complexes have been considered as [FeFe] hydrogenase catalytic site models with potential for eco-friendly energetic applications. According to this assessment, r<sup>2</sup>SCAN is identified as the density functional recommended for the reliable description of the molecular and crystal structures of the herein studied models. However, the butterfly (μ-S)<sub>2</sub>Fe<sub>2</sub> core of the models demonstrates a minor deformation of its optimized geometry obtained from both molecular and periodic calculations. The FeFe bond length is slightly underestimated while the FeS bonds tend to be too long. Adding the D3(BJ) correction to r<sup>2</sup>SCAN does not lead to any improvement in the calculated structures.

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Publication Details

Journal
Journal of Computational Chemistry
Published
2024-10-17
DOI
https://doi.org/10.1002/jcc.27515
Citations
1
Primary Topic
Metalloenzymes and iron-sulfur proteins
Type
article
Field-Weighted Citation Impact
0.10

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article

Probing the performance of DFT in the structural characterization of [FeFe] hydrogenase models

Helmar Görls, Stephan Kupfer, Grzegorz Mlostoń, Piotr Matczak et al.
1 citations
Journal of Computational Chemistry
Metalloenzymes and iron-sulfur proteins
0.10
article

Probing the performance of DFT in the structural characterization of [FeFe] hydrogenase models

Helmar Görls, Stephan Kupfer, Grzegorz Mlostoń, Piotr Matczak, Wolfgang Weigand, Philipp Buday
article en
1 citations

Abstract

In this work, a series of DFT and DFT-D methods is combined with double-ζ basis sets to benchmark their performance in predicting the structures of five newly synthesized hexacarbonyl diiron complexes with a bridging ligand featuring a μ-S<sub>2</sub>C<sub>3</sub> motif in a ring-containing unit functionalized with aromatic groups. Such complexes have been considered as [FeFe] hydrogenase catalytic site models with potential for eco-friendly energetic applications. According to this assessment, r<sup>2</sup>SCAN is identified as the density functional recommended for the reliable description of the molecular and crystal structures of the herein studied models. However, the butterfly (μ-S)<sub>2</sub>Fe<sub>2</sub> core of the models demonstrates a minor deformation of its optimized geometry obtained from both molecular and periodic calculations. The FeFe bond length is slightly underestimated while the FeS bonds tend to be too long. Adding the D3(BJ) correction to r<sup>2</sup>SCAN does not lead to any improvement in the calculated structures.

Journal of Computational ChemistryVol. 46(1)
University of Łódź (PL), Friedrich Schiller University Jena (DE)
Alexander von Humboldt-Stiftung, Infrastruktura PL-Grid, Academic Computer Centre Cyfronet, AGH University of Science and Technology
Openalex Percentile: Top 64%
Metalloenzymes and iron-sulfur proteins
0.10
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