What is the <i>real</i> value of omics data? Enhancing research outcomes and securing long-term data excellence

A wealth of high-throughput biological data, of which omics constitute a significant fraction, has been made publicly available in repositories over the past decades. These data come in various formats and cover a range of species and research areas providing insights into the complexities of biological systems; the public repositories hosting these data serve as multifaceted resources. The potentially greater value of these data lies in their secondary utilization as the deployment of data science and artificial intelligence in biology advances. Here, we critically evaluate challenges in secondary data use, focusing on omics data of human embryonic kidney cell lines available in public repositories. The emerging issues are obstacles faced by secondary data users across diverse domains as they concern platforms and repositories, which accept deposition of data irrespective of their species type. The evolving landscape of data-driven research in biology prompts re-evaluation of open access data curation and submission procedures to ensure that these challenges do not impede novel research opportunities through data exploitation. This paper aims to draw attention to widespread issues with data reporting and encourages data owners to meticulously curate submissions to maximize not only their immediate research impact but also the long-term legacy of datasets.

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Publication Details

Journal
Nucleic Acids Research
Published
2024-10-17
DOI
https://doi.org/10.1093/nar/gkae901
Citations
17
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
17.86

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article

What is the real value of omics data? Enhancing research outcomes and securing long-term data excellence

Thomas G. Evans, Duygu Dikicioǧlu, James Miskin, Felix Feyertag et al.
17 citations
Nucleic Acids Research
Scientific Computing and Data Management
17.86
article

What is the real value of omics data? Enhancing research outcomes and securing long-term data excellence

Thomas G. Evans, Duygu Dikicioǧlu, James Miskin, Felix Feyertag, E.H. Price, Kyriacos Mitrophanous
article en
17 citations

Abstract

A wealth of high-throughput biological data, of which omics constitute a significant fraction, has been made publicly available in repositories over the past decades. These data come in various formats and cover a range of species and research areas providing insights into the complexities of biological systems; the public repositories hosting these data serve as multifaceted resources. The potentially greater value of these data lies in their secondary utilization as the deployment of data science and artificial intelligence in biology advances. Here, we critically evaluate challenges in secondary data use, focusing on omics data of human embryonic kidney cell lines available in public repositories. The emerging issues are obstacles faced by secondary data users across diverse domains as they concern platforms and repositories, which accept deposition of data irrespective of their species type. The evolving landscape of data-driven research in biology prompts re-evaluation of open access data curation and submission procedures to ensure that these challenges do not impede novel research opportunities through data exploitation. This paper aims to draw attention to widespread issues with data reporting and encourages data owners to meticulously curate submissions to maximize not only their immediate research impact but also the long-term legacy of datasets.

Nucleic Acids ResearchVol. 52(20)
Oxford BioMedica (United Kingdom) (GB), University College London (GB)
UK Research and Innovation, Directorate for Biological Sciences, Biotechnology and Biological Sciences Research Council
Life in Land
Openalex Percentile: Top 1%
Scientific Computing and Data Management
17.86
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