Comprehensive evaluation and guidance of structural variation detection tools in chicken whole genome sequence data
This study highlights the importance and necessity of using real sequencing data, rather than simulated data only, with validated SVs for SV caller evaluation. Some practical guidance and suggestions are provided for SV detection in future researches.
Authors
- Xuzhen Li (ORCID: https://orcid.org/0000-0003-3670-6657)
- Xian Shi (ORCID: https://orcid.org/0000-0002-0249-7407)
- Cheng Ma (ORCID: https://orcid.org/0000-0002-4540-0089)
- Min-Sheng Peng
- Ya-Ping Zhang
Institutions
- Uppsala University (SE)
- Kunming Institute of Zoology (CN)
- Yunnan University (CN)
- Yunnan Agricultural University (CN)
- Chinese Academy of Sciences (CN)
- University of Chinese Academy of Sciences (CN)
- University of Hong Kong (HK)
Publication Details
- Journal
- BMC Genomics
- Published
- 2024-10-16
- DOI
- https://doi.org/10.1186/s12864-024-10875-1
- Citations
- 3
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.70
Funders
- National Natural Science Foundation of China
- Chinese Academy of Sciences
- Yunnan Provincial Science and Technology Department