NEXAFS Spectra Simulations of Nitrogen-Bearing Heterocycles

Five-membered heterocyclic compounds containing nitrogen atoms are important biomolecule building blocks. In addition to their fundamental biological importance, these molecular structures are used in several technological applications. Consequently, it is essential to develop techniques that allow the characterization of these fundamental systems. We address this issue by performing simulations of K-edge NEXAFS spectra by applying a time-dependent density functional theory (TDDFT) and an inner-shell multiconfigurational self-consistent field (IS-MCSCF) of selected molecules. Also, vibronic coupling simulations were considered for the TDDFT computations. Surprisingly, molecular orbital binding energies do not reproduce the order of the transition energies obtained by IS-MCSCF, indicating a possible breakdown of the orbital picture concerning the NEXAFS spectrum. In general, the TDDFT and IS-MCSCF results are compatible and are in close agreement with experimental data. Moreover, vibronic coupling and vertical transition results were very similar. Finally, it is important to mention that, to the best of our knowledge, this is the first time that the IS-MCSCF method has been applied to molecular systems of this size.

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Publication Details

Journal
ACS Omega
Published
2024-10-16
DOI
https://doi.org/10.1021/acsomega.4c07024
Primary Topic
Advanced Chemical Physics Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

NEXAFS Spectra Simulations of Nitrogen-Bearing Heterocycles

Alexandre B. Rocha, Ricardo R. Oliveira, Amanda D. Torres
ACS Omega
Advanced Chemical Physics Studies
article

NEXAFS Spectra Simulations of Nitrogen-Bearing Heterocycles

Alexandre B. Rocha, Ricardo R. Oliveira, Amanda D. Torres
article en

Abstract

Five-membered heterocyclic compounds containing nitrogen atoms are important biomolecule building blocks. In addition to their fundamental biological importance, these molecular structures are used in several technological applications. Consequently, it is essential to develop techniques that allow the characterization of these fundamental systems. We address this issue by performing simulations of K-edge NEXAFS spectra by applying a time-dependent density functional theory (TDDFT) and an inner-shell multiconfigurational self-consistent field (IS-MCSCF) of selected molecules. Also, vibronic coupling simulations were considered for the TDDFT computations. Surprisingly, molecular orbital binding energies do not reproduce the order of the transition energies obtained by IS-MCSCF, indicating a possible breakdown of the orbital picture concerning the NEXAFS spectrum. In general, the TDDFT and IS-MCSCF results are compatible and are in close agreement with experimental data. Moreover, vibronic coupling and vertical transition results were very similar. Finally, it is important to mention that, to the best of our knowledge, this is the first time that the IS-MCSCF method has been applied to molecular systems of this size.

ACS OmegaVol. 9(43)
Universidade Federal do Rio de Janeiro (BR)
Coordenação de Aperfeiçoamento de Pessoal de Nível Superior, Ministério da Ciência, Tecnologia e Inovação, Conselho Nacional de Desenvolvimento Científico e Tecnológico, Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro
Openalex Percentile: Top 83%
Advanced Chemical Physics Studies
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