Characterization of the complete chloroplast genome of <i>Liparis gigantea</i> (Orchidaceae)

<i>Liparis gigantea</i> is a Chinese traditional medicinal herb in the Orchidaceae family. It is a rare and special <i>Liparis</i> species that exhibits relatively large flowers. To illuminate its phylogenetic status and augment genomic resources, the complete chloroplast (cp) genome of <i>L. gigantea</i> was first sequenced and assembled using whole genome next-generation sequencing in this study. The cp genome size is 158,462 bp with a total GC content of 36.9%. Characterized by a quadripartite structure, the genome consists of a large single-copy (LSC) region of 86,032 bp, a small single-copy (SSC) region of 18,322 bp, which is separated by a pair of 27,054 bp inverted repeat regions (IRs). A total of 133 genes were annotated, including 87 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis strongly supported <i>L. gigantea</i> as the sister to two closely related terrestrial species, <i>Liparis nervosa</i> and <i>L. vivipara</i>. The results of this study provide genomic information for future research and application of this medicinal herb.

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Publication Details

Journal
Mitochondrial DNA Part B
Published
2024-10-02
DOI
https://doi.org/10.1080/23802359.2024.2415134
Citations
1
Primary Topic
Plant and animal studies
Type
article
Field-Weighted Citation Impact
1.03

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article

Characterization of the complete chloroplast genome of Liparis gigantea (Orchidaceae)

Caixia Peng, Xuelong Jiang, Jingjue Zeng, Li Lin et al.
1 citations
Mitochondrial DNA Part B
Plant and animal studies
1.03
article

Characterization of the complete chloroplast genome of Liparis gigantea (Orchidaceae)

Caixia Peng, Xuelong Jiang, Jingjue Zeng, Li Lin, Kunlin Wu, Lin Fang, Wenting Yang, Songjun Zeng
article en
1 citations

Abstract

<i>Liparis gigantea</i> is a Chinese traditional medicinal herb in the Orchidaceae family. It is a rare and special <i>Liparis</i> species that exhibits relatively large flowers. To illuminate its phylogenetic status and augment genomic resources, the complete chloroplast (cp) genome of <i>L. gigantea</i> was first sequenced and assembled using whole genome next-generation sequencing in this study. The cp genome size is 158,462 bp with a total GC content of 36.9%. Characterized by a quadripartite structure, the genome consists of a large single-copy (LSC) region of 86,032 bp, a small single-copy (SSC) region of 18,322 bp, which is separated by a pair of 27,054 bp inverted repeat regions (IRs). A total of 133 genes were annotated, including 87 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis strongly supported <i>L. gigantea</i> as the sister to two closely related terrestrial species, <i>Liparis nervosa</i> and <i>L. vivipara</i>. The results of this study provide genomic information for future research and application of this medicinal herb.

Mitochondrial DNA Part BVol. 9(10)
Chinese Academy of Sciences (CN), South China Botanical Garden (CN), University of Chinese Academy of Sciences (CN)
National Natural Science Foundation of China
Openalex Percentile: Top 17%
Plant and animal studies
1.03
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