Characterization of the complete chloroplast genome of <i>Liparis gigantea</i> (Orchidaceae)
<i>Liparis gigantea</i> is a Chinese traditional medicinal herb in the Orchidaceae family. It is a rare and special <i>Liparis</i> species that exhibits relatively large flowers. To illuminate its phylogenetic status and augment genomic resources, the complete chloroplast (cp) genome of <i>L. gigantea</i> was first sequenced and assembled using whole genome next-generation sequencing in this study. The cp genome size is 158,462 bp with a total GC content of 36.9%. Characterized by a quadripartite structure, the genome consists of a large single-copy (LSC) region of 86,032 bp, a small single-copy (SSC) region of 18,322 bp, which is separated by a pair of 27,054 bp inverted repeat regions (IRs). A total of 133 genes were annotated, including 87 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis strongly supported <i>L. gigantea</i> as the sister to two closely related terrestrial species, <i>Liparis nervosa</i> and <i>L. vivipara</i>. The results of this study provide genomic information for future research and application of this medicinal herb.
Authors
- Caixia Peng
- Xuelong Jiang
- Jingjue Zeng
- Li Lin (ORCID: https://orcid.org/0000-0003-2783-1114)
- Kunlin Wu
- Lin Fang
- Wenting Yang
- Songjun Zeng
Institutions
- Chinese Academy of Sciences (CN)
- South China Botanical Garden (CN)
- University of Chinese Academy of Sciences (CN)
Publication Details
- Journal
- Mitochondrial DNA Part B
- Published
- 2024-10-02
- DOI
- https://doi.org/10.1080/23802359.2024.2415134
- Citations
- 1
- Primary Topic
- Plant and animal studies
- Type
- article
- Field-Weighted Citation Impact
- 1.03
Funders
- National Natural Science Foundation of China