Molecular Association and Reactivity of the Pyridine Dimer Cation

A recent experimental report has identified the formation of the C-N hemibonded pyridine dimer cation following vacuum ultraviolet near-threshold photoionization [<i>J. Phys. Chem. Lett.</i>, <b>2021</b>, 12, 4936-4943]. Herein, the dynamics and consequent reactivity of the pyridine dimer cation were investigated employing Born-Oppenheimer molecular dynamics (BOMD) simulations. An antiparallel π-stacked pyridine dimer in the neutral ground state is transformed into a noncovalently interacting C-H···N hydrogen-bonded structure which can lead to proton transfer in the cationic state. Additionally, C-N- and N-N-bonded adducts were formed in the cationic state. Further, metastable C-H···H-C-bonded cationic species was observed, which rearranged to an N-N bonded adduct. In contrast to the experimental observation, migration of the proton to the α position was not observed in the C-N bonded adduct owing to a high barrier of about 2 eV. The observed trends in the molecular association, proton transfer, and the formation of C-N and N-N bonded adducts are a consequence of the roaming dynamics of one pyridine moiety over the other in the cationic state.

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Publication Details

Journal
The Journal of Physical Chemistry A
Published
2024-10-16
DOI
https://doi.org/10.1021/acs.jpca.4c04912
Primary Topic
Crystallography and molecular interactions
Type
article
Field-Weighted Citation Impact
0.00

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article

Molecular Association and Reactivity of the Pyridine Dimer Cation

Amol Tagad, G. Naresh Patwari
The Journal of Physical Chemistry A
Crystallography and molecular interactions
article

Molecular Association and Reactivity of the Pyridine Dimer Cation

Amol Tagad, G. Naresh Patwari
article en

Abstract

A recent experimental report has identified the formation of the C-N hemibonded pyridine dimer cation following vacuum ultraviolet near-threshold photoionization [<i>J. Phys. Chem. Lett.</i>, <b>2021</b>, 12, 4936-4943]. Herein, the dynamics and consequent reactivity of the pyridine dimer cation were investigated employing Born-Oppenheimer molecular dynamics (BOMD) simulations. An antiparallel π-stacked pyridine dimer in the neutral ground state is transformed into a noncovalently interacting C-H···N hydrogen-bonded structure which can lead to proton transfer in the cationic state. Additionally, C-N- and N-N-bonded adducts were formed in the cationic state. Further, metastable C-H···H-C-bonded cationic species was observed, which rearranged to an N-N bonded adduct. In contrast to the experimental observation, migration of the proton to the α position was not observed in the C-N bonded adduct owing to a high barrier of about 2 eV. The observed trends in the molecular association, proton transfer, and the formation of C-N and N-N bonded adducts are a consequence of the roaming dynamics of one pyridine moiety over the other in the cationic state.

The Journal of Physical Chemistry AVol. 128(42)
Indian Institute of Technology Bombay (IN)
Science and Engineering Research Board, Board of Research in Nuclear Sciences
Openalex Percentile: Top 79%
Crystallography and molecular interactions
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