A multi-omics database for the biological study of Osmanthus fragrans

Osmanthus fragrans Lour. is a well-known aromatic plant widely used as a food ingredient due to its unique floral fragrance and bioactive compounds. To fully utilize O. fragrans resources, we established an O. fragrans multi-omics database called the O. fragrans Information Resource (OfIR: http://yanglab.hzau.edu.cn/OfIR/home/ ). OfIR is a convenient and comprehensive multi-omics database that efficiently integrates phenotype and genetic variation from 127 O. fragrans cultivars, and provides many easy-to-use analysis tools, including primer design, sequence extraction, multi-sequence alignment, GO and KEGG enrichment analysis, variation annotation, and electronic PCR. Two case studies were used to demonstrate its power to mine candidate genetic variation sites or genes associated with specific traits or regulatory networks. In summary, the multi-omics database OfIR provides a convenient and user-friendly platform for researchers in mining functional genes and contributes to the genetic breeding of O. fragrans.

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Publication Details

Journal
Horticultural Plant Journal
Published
2024-10-16
DOI
https://doi.org/10.1016/j.hpj.2024.05.011
Citations
2
Primary Topic
Genetic diversity and population structure
Type
article
Field-Weighted Citation Impact
1.10

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article

A multi-omics database for the biological study of Osmanthus fragrans

Xiangling Zeng, Xuan Cai, Chengfang Luo, Qingyong Yang et al.
2 citations
Horticultural Plant Journal
Genetic diversity and population structure
1.10
article

A multi-omics database for the biological study of Osmanthus fragrans

Xiangling Zeng, Xuan Cai, Chengfang Luo, Qingyong Yang, Hongguo Chen, Jingjing Zou, Dongxu Liu, Xiang Chen, Qian Zhang, Jie Yang, Zeqing Li, Jin Zeng
article en
2 citations

Abstract

Osmanthus fragrans Lour. is a well-known aromatic plant widely used as a food ingredient due to its unique floral fragrance and bioactive compounds. To fully utilize O. fragrans resources, we established an O. fragrans multi-omics database called the O. fragrans Information Resource (OfIR: http://yanglab.hzau.edu.cn/OfIR/home/ ). OfIR is a convenient and comprehensive multi-omics database that efficiently integrates phenotype and genetic variation from 127 O. fragrans cultivars, and provides many easy-to-use analysis tools, including primer design, sequence extraction, multi-sequence alignment, GO and KEGG enrichment analysis, variation annotation, and electronic PCR. Two case studies were used to demonstrate its power to mine candidate genetic variation sites or genes associated with specific traits or regulatory networks. In summary, the multi-omics database OfIR provides a convenient and user-friendly platform for researchers in mining functional genes and contributes to the genetic breeding of O. fragrans.

Horticultural Plant JournalVol. 11(6)
Huazhong Agricultural University (CN), Hubei University of Science and Technology (CN)
National Natural Science Foundation of China, Natural Science Foundation of Hubei Province, Hubei University of Science and Technology, Science and Technology Department of Hubei Province
Zero hunger
Openalex Percentile: Top 19%
Genetic diversity and population structure
1.10
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