Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)
These findings suggest DRAGON-AI's potential to substantially aid the manual ontology construction process. However, our results also underscore the importance of having expert curators and ontology editors drive the ontology generation process.
Authors
- Rhiannon Cameron (ORCID: https://orcid.org/0000-0002-9578-0788)
- Chris Mungall (ORCID: https://orcid.org/0000-0002-6601-2165)
- William D. Duncan (ORCID: https://orcid.org/0000-0001-9625-1899)
- Damion Dooley (ORCID: https://orcid.org/0000-0002-8844-9165)
- Eric Sid (ORCID: https://orcid.org/0000-0001-7697-3026)
- Leila Kiani
- Leonore Reiser (ORCID: https://orcid.org/0000-0003-0073-0858)
- Pascale Gaudet
- Shawn T. O’Neil (ORCID: https://orcid.org/0000-0001-6220-7080)
- Sofia Robb
- Sabrina Toro (ORCID: https://orcid.org/0000-0002-4142-7153)
- Ray Stefancsik (ORCID: https://orcid.org/0000-0001-8314-2140)
- Nomi L. Harris (ORCID: https://orcid.org/0000-0001-6315-3707)
- Petra Fey
- David Osumi-Sutherland (ORCID: https://orcid.org/0000-0002-7073-9172)
- Valerie Wood (ORCID: https://orcid.org/0000-0001-6330-7526)
- Tiago Lubiana (ORCID: https://orcid.org/0000-0003-2473-2313)
- Kai Blumberg (ORCID: https://orcid.org/0000-0002-3410-4655)
- Aleix Puig-Barbe (ORCID: https://orcid.org/0000-0001-6677-8489)
- Marcin P. Joachimiak (ORCID: https://orcid.org/0000-0001-8175-045X)
- Melissa Haendel (ORCID: https://orcid.org/0000-0001-9114-8737)
- Magalie Weber (ORCID: https://orcid.org/0000-0001-6573-4070)
- Justin Reese (ORCID: https://orcid.org/0000-0002-2170-2250)
- James Seager (ORCID: https://orcid.org/0000-0001-7487-610X)
- Susan M. Bello (ORCID: https://orcid.org/0000-0003-4606-0597)
- Alexander D. Diehl (ORCID: https://orcid.org/0000-0001-9990-8331)
- Leigh Carmody (ORCID: https://orcid.org/0000-0001-7941-2961)
- Anna V. Anagnostopoulos (ORCID: https://orcid.org/0000-0002-6490-7723)
- Troy Ruemping
- Mónica Muñoz-Torres (ORCID: https://orcid.org/0000-0001-8430-6039)
Institutions
- Northwestern University (US)
- University of North Carolina at Chapel Hill (US)
- Stowers Institute for Medical Research (US)
- SIB Swiss Institute of Bioinformatics (CH)
- European Bioinformatics Institute (GB)
- Lawrence Berkeley National Laboratory (US)
- Universidade de São Paulo (BR)
- Simon Fraser University (CA)
- University of Cambridge (GB)
- Rothamsted Research (GB)
- Wellcome Sanger Institute (GB)
- University of Florida (US)
- Phoenix Bioinformatics (US)
- Beltsville Human Nutrition Research Center (US)
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR)
- Jackson Laboratory (US)
- National Center for Advancing Translational Sciences (US)
- University of Colorado Anschutz Medical Campus (US)
- University at Buffalo, State University of New York (US)
Publication Details
- Journal
- Journal of Biomedical Semantics
- Published
- 2024-10-16
- DOI
- https://doi.org/10.1186/s13326-024-00320-3
- Citations
- 39
- Primary Topic
- Biomedical Text Mining and Ontologies
- Type
- article
- Field-Weighted Citation Impact
- 9.12
Funders
- National Science Foundation
- U.S. Department of Energy
- Wellcome Trust
- Fundação de Amparo à Pesquisa do Estado de São Paulo
- National Institutes of Health
- Office of Science
- National Cancer Institute
- Basic Energy Sciences