Molecular Typing of Pseudomonas aeruginosa Isolates Collected in Abidjan Hospitals (Côte d’Ivoire) Using the Multiple-Locus Variable Number of Tandem Repeats Method

<b>Background/objectives:</b><i>Pseudomonas aeruginosa</i> can cause community-acquired infections affecting various body sites. The present retrospective study investigated the genetic diversity of 173 isolates (166 clinical, 7 environmental) of <i>P. aeruginosa</i> collected from clinical pathology laboratories in Abidjan, Côte d'Ivoire (2001-2011). <b>Methods:</b> Multiple-Locus Variable Number of Tandem Repeats (VNTR) Analysis (MLVA) using 13 loci was applied to all isolates and compared to published MLVA data. The antibiotics status of the isolates was compiled when available and compared to published profiles. <b>Results:</b> Among 95 isolates analyzed for their antibiotics status, 14 displayed concerning resistance profiles: five multidrug-resistant (MDR) and nine extensively drug-resistant (XDR). MLVA typing revealed a high genetic diversity (>130 genotypes), with many genotypes represented by a single strain. Notably, thirteen clusters (≥4 related isolates) were observed. Some clusters displayed close genetic relatedness to isolates from France, Korea, and well-studied strains (ST560, LES and PA14). Comparative analysis suggested the presence of international high-risk MDR clones (CC233, CC111) in Côte d'Ivoire. Importantly, MLVA clustering revealed a close relationship of CC235-MDR strains with a locally identified cluster (group 9). <b>Conclusions:</b> These findings support MLVA as a reliable and cost-effective tool for low-resource settings, allowing the selection of relevant strains for future whole genome sequence analyses. This approach can improve outbreak investigations and public health interventions aimed at curbing MDR <i>P. aeruginosa</i> transmission within hospitals and at the national level.

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Journal
Diagnostics
Published
2024-10-14
DOI
https://doi.org/10.3390/diagnostics14202284
Primary Topic
Antibiotic Resistance in Bacteria
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article

Molecular Typing of Pseudomonas aeruginosa Isolates Collected in Abidjan Hospitals (Côte d’Ivoire) Using the Multiple-Locus Variable Number of Tandem Repeats Method

Christiane Essoh, Yolande Hauck, Richmond Djatchi, Guillaume Yao Loukou et al.
Diagnostics
Antibiotic Resistance in Bacteria
article

Molecular Typing of Pseudomonas aeruginosa Isolates Collected in Abidjan Hospitals (Côte d’Ivoire) Using the Multiple-Locus Variable Number of Tandem Repeats Method

Christiane Essoh, Yolande Hauck, Richmond Djatchi, Guillaume Yao Loukou, Christine Pourcel, Assanvo Simon-Pierre N’guetta, Gilles Vergnaud, Daouda Touré, Timothée Ouassa
article en

Abstract

<b>Background/objectives:</b><i>Pseudomonas aeruginosa</i> can cause community-acquired infections affecting various body sites. The present retrospective study investigated the genetic diversity of 173 isolates (166 clinical, 7 environmental) of <i>P. aeruginosa</i> collected from clinical pathology laboratories in Abidjan, Côte d'Ivoire (2001-2011). <b>Methods:</b> Multiple-Locus Variable Number of Tandem Repeats (VNTR) Analysis (MLVA) using 13 loci was applied to all isolates and compared to published MLVA data. The antibiotics status of the isolates was compiled when available and compared to published profiles. <b>Results:</b> Among 95 isolates analyzed for their antibiotics status, 14 displayed concerning resistance profiles: five multidrug-resistant (MDR) and nine extensively drug-resistant (XDR). MLVA typing revealed a high genetic diversity (>130 genotypes), with many genotypes represented by a single strain. Notably, thirteen clusters (≥4 related isolates) were observed. Some clusters displayed close genetic relatedness to isolates from France, Korea, and well-studied strains (ST560, LES and PA14). Comparative analysis suggested the presence of international high-risk MDR clones (CC233, CC111) in Côte d'Ivoire. Importantly, MLVA clustering revealed a close relationship of CC235-MDR strains with a locally identified cluster (group 9). <b>Conclusions:</b> These findings support MLVA as a reliable and cost-effective tool for low-resource settings, allowing the selection of relevant strains for future whole genome sequence analyses. This approach can improve outbreak investigations and public health interventions aimed at curbing MDR <i>P. aeruginosa</i> transmission within hospitals and at the national level.

DiagnosticsVol. 14(20)
Centre National de la Recherche Scientifique (FR), Commissariat à l'Énergie Atomique et aux Énergies Alternatives (FR), Université Paris-Saclay (FR), Institut de Biologie Intégrative de la Cellule (FR), Université Pelefero Gon Coulibaly (CI), CEA Paris-Saclay (FR), Laboratoire National de Santé (LU), University Hospital Medical Center at Treichville (CI), Université Félix Houphouët-Boigny (CI)
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Openalex Percentile: Top 89%
Antibiotic Resistance in Bacteria
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