Effects of selection stringency on the outcomes of directed evolution

Directed evolution makes mutant lineages compete in climbing complicated sequence-function landscapes. Given this underlying complexity it is unclear how selection stringency, a ubiquitous parameter of directed evolution, impacts the outcome. Here we approach this question in terms of the fitnesses of the candidate variants at each round and the heterogeneity of their distributions of fitness effects. We show that even if the fittest mutant is most likely to yield the fittest mutants in the next round of selection, diversification can improve outcomes by sampling a larger variety of fitness effects. We find that heterogeneity in fitness effects between variants, larger population sizes, and evolution over a greater number of rounds all encourage diversification.

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Publication Details

Journal
PLoS ONE
Published
2024-10-14
DOI
https://doi.org/10.1371/journal.pone.0311438
Citations
2
Primary Topic
Evolution and Genetic Dynamics
Type
article
Field-Weighted Citation Impact
1.10

Funders

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article

Effects of selection stringency on the outcomes of directed evolution

Michael M. Desai, Berk A. Alpay
2 citations
PLoS ONE
Evolution and Genetic Dynamics
1.10
article

Effects of selection stringency on the outcomes of directed evolution

Michael M. Desai, Berk A. Alpay
article en
2 citations

Abstract

Directed evolution makes mutant lineages compete in climbing complicated sequence-function landscapes. Given this underlying complexity it is unclear how selection stringency, a ubiquitous parameter of directed evolution, impacts the outcome. Here we approach this question in terms of the fitnesses of the candidate variants at each round and the heterogeneity of their distributions of fitness effects. We show that even if the fittest mutant is most likely to yield the fittest mutants in the next round of selection, diversification can improve outcomes by sampling a larger variety of fitness effects. We find that heterogeneity in fitness effects between variants, larger population sizes, and evolution over a greater number of rounds all encourage diversification.

PLoS ONEVol. 19(10)
Harvard University (US), Quantitative BioSciences (US)
National Science Foundation, National Institutes of Health
Life in Land
Openalex Percentile: Top 19%
Evolution and Genetic Dynamics
1.10
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