Open-source software integration: A tutorial on species distribution mapping and ecological niche modelling

Over the last decade, access to global data has become increasingly critical for research, allowing insights into diverse biological, environmental and societal questions at a macro scale. Digitisation has greatly enhanced the use of herbarium data in the analysis of species distributions and ecological niche modelling. Yet, sources on modelling and mapping methodology using open-source software is greatly lacking for beginners. We have created a replicable and thorough tutorial to visualise species occurrence data and exploratory analysis that was developed by undergraduates with broad backgrounds and levels of experience. This tutorial integrates the open-source programmes QGIS, MaxEnt and R to develop distribution maps, using bryophytes as a case study, to promote the accessibility of open-source software and remote access learning. This tutorial has already set the foundation for further research into distribution modelling of rare Illinois bryophytes to better understand the potential impact of climate change.

Authors

Publication Details

Journal
Research Ideas and Outcomes
Published
2024-10-14
DOI
https://doi.org/10.3897/rio.10.e129578
Primary Topic
Species Distribution and Climate Change
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Open-source software integration: A tutorial on species distribution mapping and ecological niche modelling

Thomas Campbell, Nkosi Evans, Zoe Ryan, Emily Clark et al.
Research Ideas and Outcomes
Species Distribution and Climate Change
article

Open-source software integration: A tutorial on species distribution mapping and ecological niche modelling

Thomas Campbell, Nkosi Evans, Zoe Ryan, Emily Clark, Matt von Konrat, Beatrice Cundiff, Danny Kreider, Joslyn Nichols, Maya Mahoney
article en

Abstract

Over the last decade, access to global data has become increasingly critical for research, allowing insights into diverse biological, environmental and societal questions at a macro scale. Digitisation has greatly enhanced the use of herbarium data in the analysis of species distributions and ecological niche modelling. Yet, sources on modelling and mapping methodology using open-source software is greatly lacking for beginners. We have created a replicable and thorough tutorial to visualise species occurrence data and exploratory analysis that was developed by undergraduates with broad backgrounds and levels of experience. This tutorial integrates the open-source programmes QGIS, MaxEnt and R to develop distribution maps, using bryophytes as a case study, to promote the accessibility of open-source software and remote access learning. This tutorial has already set the foundation for further research into distribution modelling of rare Illinois bryophytes to better understand the potential impact of climate change.

Research Ideas and OutcomesVol. 10
Climate action
Openalex Percentile: Top 95%
Species Distribution and Climate Change
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.