<i>Sporosarcina hypophthalmichthys</i> sp. nov. Isolated From Gastrointestinal Tract of Fish <i>Hypophthalmichthys molitrix</i> (Valenciennes, 1844)

A rod-shaped, motile, Gram-stain-positive bacterial strain RKN2<sup>T</sup>, was isolated from gut of silver carp (Hypophthalmichthys molitrix) residing in Gobindsagar reservoir, Himachal Pradesh, India. Having the greatest sequence similarity to Sporosarcina koreensis F73<sup>T</sup> (98.51%), Sporosarcina luteola Y1<sup>T</sup> (98.4%) and Sporosarcina aquimarina SW28<sup>T</sup> (98.36%), the 16S rRNA gene phylogeny confirmed the belonging of strain RKN2<sup>T</sup> to genus Sporosarcina. Digital DNA-DNA hybridization values were 21.7%, 20.6%, and 19.2%, and average nucleotide identity values were 76.42%, 80.16%, 76.51%, of strain RKN2<sup>T</sup> with Sporosarcina koreensis F73<sup>T</sup>, Sporosarcina luteola Y1<sup>T</sup>, and Sporosarcina aquimarina SW28<sup>T</sup>, respectively. The genomic analysis of strain RKN2<sup>T</sup> showed various biological properties including nitrate reduction, genes responsible for carbohydrate-active enzymes production, antimicrobial compounds, as well as potential metabolism of aromatic compounds and heavy metals. G+C composition of RKN2<sup>T</sup> genome was 52.7%. This strain can grow in temperatures between 10°C and 40°C (optimum, 28°C-30°C), NaCl concentrations up to 6.0% (w/v), and 6.0-8.0 (optimum, 6.5-7.5) pH range. MK-7 was the dominant respiratory quinone, A-4 type cell wall peptidoglycan was present with anteiso-C<sub>15:0</sub>, iso-C<sub>15: 0</sub>, and anteiso-C17:0 being the major fatty acids and Lys-Glu being main amino acids. Diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine were the strain RKN2<sup>T</sup>'s three main polar lipids. The strain is a novel species under genus Sporosarcina based on polyphasic approach and the name Sporosarcina hypophthalmichthys sp. nov. is given for strain RKN2<sup>T</sup>. RKN2<sup>T</sup> is a type strain (= MCC 4365<sup>T</sup> = JCM34522<sup>T</sup> = CCM9112<sup>T</sup>).

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Journal
Journal of Basic Microbiology
Published
2024-10-13
DOI
https://doi.org/10.1002/jobm.202400226
Citations
2
Primary Topic
Genomics and Phylogenetic Studies
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article

Sporosarcina hypophthalmichthys sp. nov. Isolated From Gastrointestinal Tract of Fish Hypophthalmichthys molitrix (Valenciennes, 1844)

Suresh Korpole, Sneha Siwach, Meghali Bharti, Ram Krishan Negi et al.
2 citations
Journal of Basic Microbiology
Genomics and Phylogenetic Studies
0.47
article

Sporosarcina hypophthalmichthys sp. nov. Isolated From Gastrointestinal Tract of Fish Hypophthalmichthys molitrix (Valenciennes, 1844)

Suresh Korpole, Sneha Siwach, Meghali Bharti, Ram Krishan Negi, Himani Khurana, Sonakshi Modeel, Stanzin Choksket, Monika Sharma
article en
2 citations

Abstract

A rod-shaped, motile, Gram-stain-positive bacterial strain RKN2<sup>T</sup>, was isolated from gut of silver carp (Hypophthalmichthys molitrix) residing in Gobindsagar reservoir, Himachal Pradesh, India. Having the greatest sequence similarity to Sporosarcina koreensis F73<sup>T</sup> (98.51%), Sporosarcina luteola Y1<sup>T</sup> (98.4%) and Sporosarcina aquimarina SW28<sup>T</sup> (98.36%), the 16S rRNA gene phylogeny confirmed the belonging of strain RKN2<sup>T</sup> to genus Sporosarcina. Digital DNA-DNA hybridization values were 21.7%, 20.6%, and 19.2%, and average nucleotide identity values were 76.42%, 80.16%, 76.51%, of strain RKN2<sup>T</sup> with Sporosarcina koreensis F73<sup>T</sup>, Sporosarcina luteola Y1<sup>T</sup>, and Sporosarcina aquimarina SW28<sup>T</sup>, respectively. The genomic analysis of strain RKN2<sup>T</sup> showed various biological properties including nitrate reduction, genes responsible for carbohydrate-active enzymes production, antimicrobial compounds, as well as potential metabolism of aromatic compounds and heavy metals. G+C composition of RKN2<sup>T</sup> genome was 52.7%. This strain can grow in temperatures between 10°C and 40°C (optimum, 28°C-30°C), NaCl concentrations up to 6.0% (w/v), and 6.0-8.0 (optimum, 6.5-7.5) pH range. MK-7 was the dominant respiratory quinone, A-4 type cell wall peptidoglycan was present with anteiso-C<sub>15:0</sub>, iso-C<sub>15: 0</sub>, and anteiso-C17:0 being the major fatty acids and Lys-Glu being main amino acids. Diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine were the strain RKN2<sup>T</sup>'s three main polar lipids. The strain is a novel species under genus Sporosarcina based on polyphasic approach and the name Sporosarcina hypophthalmichthys sp. nov. is given for strain RKN2<sup>T</sup>. RKN2<sup>T</sup> is a type strain (= MCC 4365<sup>T</sup> = JCM34522<sup>T</sup> = CCM9112<sup>T</sup>).

Journal of Basic MicrobiologyVol. 64(12)
University of Delhi (IN), Institute of Microbial Technology (IN)
Life below water
Openalex Percentile: Top 35%
Genomics and Phylogenetic Studies
0.47
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