Enhanced stimulated Raman and fluorescence imaging by single-frame trained BDN

Hyperspectral and multispectral imaging capture an expanded dimension of information that facilitates discoveries. However, image features are frequently obscured by noise generated from the limited photodamage threshold of the specimen. Although machine learning approaches demonstrate considerable promise in addressing this challenge, they typically require extensive datasets, which can be difficult to obtain. Here, we introduce BiFormer denoising network (BDN), designed to effectively and efficiently extract image features by utilizing both local and global level connections, sparse architectures, and fine-tuning. Experimental results indicate that BDN enhances the quality of stimulated Raman scattering (SRS) images by up to 16-fold in signal-to-noise ratio (SNR), particularly improving subtle features at higher spatial frequencies. Furthermore, BDN is successfully adapted to fluorescence imaging, achieving significant improvements in SNR and order-of-magnitude reduction in exposure time, thereby showcasing its versatility across various imaging modalities. Collectively, BDN exhibits substantial potential for spectroscopic imaging applications in the fields of biomedicine and materials science.

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Publication Details

Journal
Optics Express
Published
2024-10-14
DOI
https://doi.org/10.1364/oe.537581
Citations
5
Primary Topic
Spectroscopy Techniques in Biomedical and Chemical Research
Type
article
Field-Weighted Citation Impact
3.31

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article

Enhanced stimulated Raman and fluorescence imaging by single-frame trained BDN

Hyeon Jeong Lee, Xiangjie Huang, Delong Zhang, Yongqing Zhang et al.
5 citations
Optics Express
Spectroscopy Techniques in Biomedical and Chemical Research
3.31
article

Enhanced stimulated Raman and fluorescence imaging by single-frame trained BDN

Hyeon Jeong Lee, Xiangjie Huang, Delong Zhang, Yongqing Zhang, Xiaobin Tang
article en
5 citations

Abstract

Hyperspectral and multispectral imaging capture an expanded dimension of information that facilitates discoveries. However, image features are frequently obscured by noise generated from the limited photodamage threshold of the specimen. Although machine learning approaches demonstrate considerable promise in addressing this challenge, they typically require extensive datasets, which can be difficult to obtain. Here, we introduce BiFormer denoising network (BDN), designed to effectively and efficiently extract image features by utilizing both local and global level connections, sparse architectures, and fine-tuning. Experimental results indicate that BDN enhances the quality of stimulated Raman scattering (SRS) images by up to 16-fold in signal-to-noise ratio (SNR), particularly improving subtle features at higher spatial frequencies. Furthermore, BDN is successfully adapted to fluorescence imaging, achieving significant improvements in SNR and order-of-magnitude reduction in exposure time, thereby showcasing its versatility across various imaging modalities. Collectively, BDN exhibits substantial potential for spectroscopic imaging applications in the fields of biomedicine and materials science.

Optics ExpressVol. 32(23)
Zhejiang University (CN)
National Natural Science Foundation of China, Fundamental Research Funds for the Central Universities
Openalex Percentile: Top 8%
Spectroscopy Techniques in Biomedical and Chemical Research
3.31
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Enhanced stimulated Raman and fluorescence imaging by single-frame trained BDN — Hyeon Jeong Lee, Xiangjie Huang, et al. · Optics Express (2024) | TGRS Research Map | TGRS