Deep silicification–assisted long-term preservation of structural and genomic information across biospecies: From micro to macro

The concurrent preservation of morphological, structural, and genomic attributes within biological samples is paramount for comprehensive insights into biological phenomena and disease mechanisms. However, current preservation methodologies (e.g., cryopreservation, chemical reagent fixation, and bioplasticization) exhibit limitations in simultaneously achieving these critical combined goals. To address this gap, inspired by natural fossilization, here we propose "deep silicification," a room temperature technology that eliminates fixation requirements and overcomes the cold chain problem. By harnessing the synergy between ethanol and dimethyl sulfoxide, deep silicification significantly enhances silica penetration and accumulation within bioorganisms, thereby reinforcing structural integrity. This versatile and cost-effective approach demonstrates remarkable efficacy in preserving organismal morphology across various scales. Accelerated aging experiments underscore a 4,723-fold enhancement in genomic information storage over millennia, with whole-genome sequencing confirming nearly 100% fidelity. With its simplicity and reliability, "deep silicification" represents a paradigm shift in biological sample storage.

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Publication Details

Journal
Proceedings of the National Academy of Sciences
Published
2024-10-10
DOI
https://doi.org/10.1073/pnas.2408273121
Citations
8
Primary Topic
Diatoms and Algae Research
Type
article
Field-Weighted Citation Impact
1.39

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article

Deep silicification–assisted long-term preservation of structural and genomic information across biospecies: From micro to macro

Liang Zhou, Ting Ruan, C. Jeffrey Brinker, Qi Lei et al.
8 citations
Proceedings of the National Academy of Sciences
Diatoms and Algae Research
1.39
article

Deep silicification–assisted long-term preservation of structural and genomic information across biospecies: From micro to macro

Liang Zhou, Ting Ruan, C. Jeffrey Brinker, Qi Lei, Minmin Zhang, Jimin Guo, Wei Hua Zhu, Ke Liang
article en
8 citations

Abstract

The concurrent preservation of morphological, structural, and genomic attributes within biological samples is paramount for comprehensive insights into biological phenomena and disease mechanisms. However, current preservation methodologies (e.g., cryopreservation, chemical reagent fixation, and bioplasticization) exhibit limitations in simultaneously achieving these critical combined goals. To address this gap, inspired by natural fossilization, here we propose "deep silicification," a room temperature technology that eliminates fixation requirements and overcomes the cold chain problem. By harnessing the synergy between ethanol and dimethyl sulfoxide, deep silicification significantly enhances silica penetration and accumulation within bioorganisms, thereby reinforcing structural integrity. This versatile and cost-effective approach demonstrates remarkable efficacy in preserving organismal morphology across various scales. Accelerated aging experiments underscore a 4,723-fold enhancement in genomic information storage over millennia, with whole-genome sequencing confirming nearly 100% fidelity. With its simplicity and reliability, "deep silicification" represents a paradigm shift in biological sample storage.

Proceedings of the National Academy of SciencesVol. 121(42)
University of New Mexico (US), South China Normal University (CN), Second Affiliated Hospital of Guangzhou Medical University (CN), Beijing University of Chemical Technology (CN), South China University of Technology (CN), Guangzhou Medical University (CN)
National Natural Science Foundation of China, Natural Science Foundation of Guangdong Province, Guangdong Provincial Pearl River Talents Program, Fundamental Research Funds for the Central Universities, National Natural Science Foundation of China-Guangdong Joint Fund
Life in Land
Openalex Percentile: Top 21%
Diatoms and Algae Research
1.39
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