Bayesian parameter inference for epithelial mechanics

Cell-based mechanical models, such as the Cell Vertex Model (CVM), have proven useful for studying the mechanical control of epithelial tissue dynamics. We recently developed a statistical method called image-based parameter inference for formulating CVM model functions and estimating their parameters from image data of epithelial tissues. In this study, we employed Bayesian statistics to improve the utility and flexibility of image-based parameter inference. Tests on synthetic data confirmed that both our non-hierarchical and hierarchical Bayesian models provide accurate estimates of model parameters. By applying this method to Drosophila wings, we demonstrated that the reliability of parameter estimation is closely linked to the mechanical anisotropies present in the tissue. Moreover, we revealed that the cortical elasticity term is dispensable for explaining force-shape correlations in vivo. We anticipate that the flexibility of the Bayesian statistical framework will facilitate the integration of various types of information, thereby contributing to the quantitative dissection of the mechanical control of tissue dynamics.

Authors

Institutions

Publication Details

Journal
Journal of Theoretical Biology
Published
2024-10-10
DOI
https://doi.org/10.1016/j.jtbi.2024.111960
Citations
2
Primary Topic
Cellular Mechanics and Interactions
Type
article
Field-Weighted Citation Impact
0.65

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Bayesian parameter inference for epithelial mechanics

Goshi Ogita, Kaoru Sugimura, Xin Yan, Shuji Ishihara
2 citations
Journal of Theoretical Biology
Cellular Mechanics and Interactions
0.65
article

Bayesian parameter inference for epithelial mechanics

Goshi Ogita, Kaoru Sugimura, Xin Yan, Shuji Ishihara
article en
2 citations

Abstract

Cell-based mechanical models, such as the Cell Vertex Model (CVM), have proven useful for studying the mechanical control of epithelial tissue dynamics. We recently developed a statistical method called image-based parameter inference for formulating CVM model functions and estimating their parameters from image data of epithelial tissues. In this study, we employed Bayesian statistics to improve the utility and flexibility of image-based parameter inference. Tests on synthetic data confirmed that both our non-hierarchical and hierarchical Bayesian models provide accurate estimates of model parameters. By applying this method to Drosophila wings, we demonstrated that the reliability of parameter estimation is closely linked to the mechanical anisotropies present in the tissue. Moreover, we revealed that the cortical elasticity term is dispensable for explaining force-shape correlations in vivo. We anticipate that the flexibility of the Bayesian statistical framework will facilitate the integration of various types of information, thereby contributing to the quantitative dissection of the mechanical control of tissue dynamics.

Journal of Theoretical BiologyVol. 595
Tokyo University of the Arts (JP), RIKEN Center for Biosystems Dynamics Research (JP), The University of Tokyo (JP)
Japan Science and Technology Corporation, Japan Society for the Promotion of Science
Openalex Percentile: Top 32%
Cellular Mechanics and Interactions
0.65
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.