Comparative Toxicogenomics Database’s 20th anniversary: update 2025

For 20 years, the Comparative Toxicogenomics Database (CTD; https://ctdbase.org) has provided high-quality, literature-based curated content describing how environmental chemicals affect human health. Today, CTD includes over 94 million toxicogenomic connections relating chemicals, genes/proteins, phenotypes, anatomical terms, diseases, comparative species, pathways and exposures. In this 20th year anniversary update, we reflect on CTD's remarkable growth and provide an overview of the increased data content and new features, including enhancements to the curation workflow (e.g. new exposure curation tool and expanded use of natural language processing), added functionality (e.g. improvements to CTD Tetramers and Pathway View tools) and significant upgrades to software and infrastructure. Linking lab-based core curation with real-world human exposure curation via the use of controlled vocabularies facilitates analysis of content across the entire environmental health continuum, from molecular toxicological mechanisms to the population level, and vice versa. The 'prototype database' originally described in 2004 has evolved into a premier, sophisticated, highly cited and well-engineered knowledgebase and discoverybase that is utilized by scientists worldwide to design testable hypotheses about environmental health.

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Publication Details

Journal
Nucleic Acids Research
Published
2024-10-10
DOI
https://doi.org/10.1093/nar/gkae883
Citations
161
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
Field-Weighted Citation Impact
37.65

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article

Comparative Toxicogenomics Database’s 20th anniversary: update 2025

Roy McMorran, Jolene Wiegers, Melissa Strong, Daniela Sciaky et al.
161 citations
Nucleic Acids Research
Biomedical Text Mining and Ontologies
37.65
article

Comparative Toxicogenomics Database’s 20th anniversary: update 2025

Roy McMorran, Jolene Wiegers, Melissa Strong, Daniela Sciaky, Allan Peter Davis, Sakib Abrar, Thomas C. Wiegers, Brent Wyatt, Carolyn Mattingly, Fern Barkalow
article en
161 citations

Abstract

For 20 years, the Comparative Toxicogenomics Database (CTD; https://ctdbase.org) has provided high-quality, literature-based curated content describing how environmental chemicals affect human health. Today, CTD includes over 94 million toxicogenomic connections relating chemicals, genes/proteins, phenotypes, anatomical terms, diseases, comparative species, pathways and exposures. In this 20th year anniversary update, we reflect on CTD's remarkable growth and provide an overview of the increased data content and new features, including enhancements to the curation workflow (e.g. new exposure curation tool and expanded use of natural language processing), added functionality (e.g. improvements to CTD Tetramers and Pathway View tools) and significant upgrades to software and infrastructure. Linking lab-based core curation with real-world human exposure curation via the use of controlled vocabularies facilitates analysis of content across the entire environmental health continuum, from molecular toxicological mechanisms to the population level, and vice versa. The 'prototype database' originally described in 2004 has evolved into a premier, sophisticated, highly cited and well-engineered knowledgebase and discoverybase that is utilized by scientists worldwide to design testable hypotheses about environmental health.

Nucleic Acids ResearchVol. 53(D1)
North Carolina State University (US)
National Institute of Environmental Health Sciences
Industry, innovation and infrastructure
Openalex Percentile: Top 0%
Biomedical Text Mining and Ontologies
37.65
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