Functional evaluation of <i>TMEM176B</i> and its predictive role for severe respiratory viral infection through integrated analysis of single‐cell and bulk RNA‐sequencing

Transmembrane protein 176B (TMEM176B), localized mainly on the endosomal membrane, has been reported as an immune regulatory factor in malignant diseases. However, the biological function of this molecule remains undetermined during respiratory viral infections. To investigate the functions and prognostic value of this gene, six gene sets were selected from the Gene Expression Omnibus database for research. First, the function of TMEM176B and its co-expressed genes were evaluated at different levels (cell, peripheral blood, lung tissue). Afterwards, a machine learning algorithm was utilized to analyze the relationship between TMEM176B and its interacting genes with prognosis. After importance evaluation and variable screening, a prognostic model was established. Finally, the reliability of the model was further verified through external data sets. In vitro experiments were conducted to validate the function of TMEM176B. TMEM176B and its co-expressed genes are involved in multiple processes such as inflammasome activation, myeloid immune cell development, and immune cell infiltration. Machine learning further screened 27 interacting gene modules including TMEM176B as prognostic models for severe respiratory viral infections, with the area under the ROC curve (AUCs) of 0.986 and 0.905 in derivation and external validation sets, respectively. We further confirmed that viral load as well as NLRP3 activation and cell death were significantly enhanced in TMEM176B<sup>-/-</sup> THP-1-differentiated macrophages via in vitro experiments. Our study revealed that TMEM176B is involved in a wide range of biological functions in respiratory viral infections and has potential prognostic value, which is expected to bring new insights into the clinical management of severe respiratory viral infection hosts.

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Publication Details

Journal
Journal of Medical Virology
Published
2024-10-01
DOI
https://doi.org/10.1002/jmv.29954
Citations
3
Primary Topic
Immune cells in cancer
Type
article
Field-Weighted Citation Impact
0.72

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article

Functional evaluation of TMEM176B and its predictive role for severe respiratory viral infection through integrated analysis of single‐cell and bulk RNA‐sequencing

Hui Li, Bin Cao, Jiapei Yu, Shumei Zou et al.
3 citations
Journal of Medical Virology
Immune cells in cancer
0.72
article

Functional evaluation of TMEM176B and its predictive role for severe respiratory viral infection through integrated analysis of single‐cell and bulk RNA‐sequencing

Hui Li, Bin Cao, Jiapei Yu, Shumei Zou, Congcong Shang
article en
3 citations

Abstract

Transmembrane protein 176B (TMEM176B), localized mainly on the endosomal membrane, has been reported as an immune regulatory factor in malignant diseases. However, the biological function of this molecule remains undetermined during respiratory viral infections. To investigate the functions and prognostic value of this gene, six gene sets were selected from the Gene Expression Omnibus database for research. First, the function of TMEM176B and its co-expressed genes were evaluated at different levels (cell, peripheral blood, lung tissue). Afterwards, a machine learning algorithm was utilized to analyze the relationship between TMEM176B and its interacting genes with prognosis. After importance evaluation and variable screening, a prognostic model was established. Finally, the reliability of the model was further verified through external data sets. In vitro experiments were conducted to validate the function of TMEM176B. TMEM176B and its co-expressed genes are involved in multiple processes such as inflammasome activation, myeloid immune cell development, and immune cell infiltration. Machine learning further screened 27 interacting gene modules including TMEM176B as prognostic models for severe respiratory viral infections, with the area under the ROC curve (AUCs) of 0.986 and 0.905 in derivation and external validation sets, respectively. We further confirmed that viral load as well as NLRP3 activation and cell death were significantly enhanced in TMEM176B<sup>-/-</sup> THP-1-differentiated macrophages via in vitro experiments. Our study revealed that TMEM176B is involved in a wide range of biological functions in respiratory viral infections and has potential prognostic value, which is expected to bring new insights into the clinical management of severe respiratory viral infection hosts.

Journal of Medical VirologyVol. 96(10)
Academy of Medical Sciences (GB), Capital Medical University (CN), Chinese Academy of Medical Sciences & Peking Union Medical College (CN), Peking University (CN), China-Japan Friendship Hospital (CN), Peking Union Medical College Hospital (CN), National Clinical Research (US), National Institute for Viral Disease Control and Prevention (CN), Center for Life Sciences (CN), Tsinghua University (CN)
National Natural Science Foundation of China
Good health and well-being
Openalex Percentile: Top 29%
Immune cells in cancer
0.72
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