Active Learning of Boltzmann Samplers and Potential Energies with Quantum Mechanical Accuracy

Extracting consistent statistics between relevant free energy minima of a molecular system is essential for physics, chemistry, and biology. Molecular dynamics (MD) simulations can aid in this task but are computationally expensive, especially for systems that require quantum accuracy. To overcome this challenge, we developed an approach combining enhanced sampling with deep generative models and active learning of a machine learning potential (MLP). We introduce an adaptive Markov chain Monte Carlo framework that enables the training of one normalizing flow (NF) and one MLP per state, achieving rapid convergence toward the Boltzmann distribution. Leveraging the trained NF and MLP models, we compute thermodynamic observables such as free energy differences and optical spectra. We apply this method to study the isomerization of an ultrasmall silver nanocluster belonging to a set of systems with diverse applications in the fields of medicine and catalysis.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2024-10-07
DOI
https://doi.org/10.1021/acs.jctc.4c00506
Citations
5
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.59

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article

Active Learning of Boltzmann Samplers and Potential Energies with Quantum Mechanical Accuracy

Marylou Gabrié, Olga Lopez‐Acevedo, Pilar Cossio, Ana Molina-Taborda
5 citations
Journal of Chemical Theory and Computation
Machine Learning in Materials Science
0.59
article

Active Learning of Boltzmann Samplers and Potential Energies with Quantum Mechanical Accuracy

Marylou Gabrié, Olga Lopez‐Acevedo, Pilar Cossio, Ana Molina-Taborda
article en
5 citations

Abstract

Extracting consistent statistics between relevant free energy minima of a molecular system is essential for physics, chemistry, and biology. Molecular dynamics (MD) simulations can aid in this task but are computationally expensive, especially for systems that require quantum accuracy. To overcome this challenge, we developed an approach combining enhanced sampling with deep generative models and active learning of a machine learning potential (MLP). We introduce an adaptive Markov chain Monte Carlo framework that enables the training of one normalizing flow (NF) and one MLP per state, achieving rapid convergence toward the Boltzmann distribution. Leveraging the trained NF and MLP models, we compute thermodynamic observables such as free energy differences and optical spectra. We apply this method to study the isomerization of an ultrasmall silver nanocluster belonging to a set of systems with diverse applications in the fields of medicine and catalysis.

Journal of Chemical Theory and ComputationVol. 20(20)
Centre National de la Recherche Scientifique (FR), École Polytechnique (FR), Universidad de Antioquia (CO), Flatiron Health (United States) (US)
Universidad de Antioquia
Affordable and clean energy
Openalex Percentile: Top 33%
Machine Learning in Materials Science
0.59
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