Identification and validation of reference genes for RT-qPCR analysis in <i>Sclerodermus guani</i> (Hymenoptera: Bethylidae)

Gene expression studies in organisms are often conducted using reverse transcriptase-quantitative polymerase chain reaction (RT-qPCR), and the accuracy of RT-qPCR results relies on the stability of reference genes. We examined ten candidate reference genes in <i>Sclerodermus guani</i>, a parasitoid wasp that is a natural enemy of long-horned beetle pests in forestry, including <i>ACT, EF1α, Hsc70, Hsp70, SRSF7, α-tubulin, RPL7A, 18S, 28S,</i> and <i>SOD1</i>, regarding variable biotic and abiotic factors such as body part, life stage, hormone, diet, and temperature. Data were analysed using four dedicated algorithms (ΔCt, BestKeeper, NormFinder, and geNorm) and one comparative tool (RefFinder). Our results showed that the most stable reference genes were <i>RPL7A</i> and <i>EF1α</i> regarding the body part, <i>SRSF7</i> and <i>Hsc70</i> regarding the diet, <i>RPL7A</i> and <i>α-tubulin</i> regarding the hormone, <i>SRSF7</i> and <i>RPL7A</i> regarding the life stage, and <i>SRSF7</i> and <i>α-tubulin</i> regarding temperature. To ascertain the applicability of specific reference genes, the expression level of the target gene (<i>ACPase</i>) was estimated regarding the body part using the most stable reference genes, <i>RPL7A</i> and <i>EF1α</i>, and the least stable one, <i>SOD1</i>. The highest expression level of <i>ACPase</i> was observed in the abdomen, and the validity of <i>RPL7A</i> and <i>EF1α</i> was confirmed. This study provides, for the first time, an extensive list of reliable reference genes for molecular biology studies in <i>S. guani</i>.

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Publication Details

Journal
Bulletin of Entomological Research
Published
2024-10-01
DOI
https://doi.org/10.1017/s0007485324000427
Citations
2
Primary Topic
Molecular Biology Techniques and Applications
Type
article
Field-Weighted Citation Impact
0.47

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article

Identification and validation of reference genes for RT-qPCR analysis in Sclerodermus guani (Hymenoptera: Bethylidae)

Rina Zhao, Xiaomeng Guo, Baoping Li, Meng Ling
2 citations
Bulletin of Entomological Research
Molecular Biology Techniques and Applications
0.47
article

Identification and validation of reference genes for RT-qPCR analysis in Sclerodermus guani (Hymenoptera: Bethylidae)

Rina Zhao, Xiaomeng Guo, Baoping Li, Meng Ling
article en
2 citations

Abstract

Gene expression studies in organisms are often conducted using reverse transcriptase-quantitative polymerase chain reaction (RT-qPCR), and the accuracy of RT-qPCR results relies on the stability of reference genes. We examined ten candidate reference genes in <i>Sclerodermus guani</i>, a parasitoid wasp that is a natural enemy of long-horned beetle pests in forestry, including <i>ACT, EF1α, Hsc70, Hsp70, SRSF7, α-tubulin, RPL7A, 18S, 28S,</i> and <i>SOD1</i>, regarding variable biotic and abiotic factors such as body part, life stage, hormone, diet, and temperature. Data were analysed using four dedicated algorithms (ΔCt, BestKeeper, NormFinder, and geNorm) and one comparative tool (RefFinder). Our results showed that the most stable reference genes were <i>RPL7A</i> and <i>EF1α</i> regarding the body part, <i>SRSF7</i> and <i>Hsc70</i> regarding the diet, <i>RPL7A</i> and <i>α-tubulin</i> regarding the hormone, <i>SRSF7</i> and <i>RPL7A</i> regarding the life stage, and <i>SRSF7</i> and <i>α-tubulin</i> regarding temperature. To ascertain the applicability of specific reference genes, the expression level of the target gene (<i>ACPase</i>) was estimated regarding the body part using the most stable reference genes, <i>RPL7A</i> and <i>EF1α</i>, and the least stable one, <i>SOD1</i>. The highest expression level of <i>ACPase</i> was observed in the abdomen, and the validity of <i>RPL7A</i> and <i>EF1α</i> was confirmed. This study provides, for the first time, an extensive list of reliable reference genes for molecular biology studies in <i>S. guani</i>.

Bulletin of Entomological ResearchVol. 114(5)
Nanjing Agricultural University (CN)
Government of Jiangsu Province, Nanjing Agricultural University
Life in Land
Openalex Percentile: Top 35%
Molecular Biology Techniques and Applications
0.47
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Identification and validation of reference genes for RT-qPCR analysis in <i>Sclerodermus guani</i> (Hymenoptera: Bethylidae) — Rina Zhao, Xiaomeng Guo, et al. · Bulletin of Entomological Research (2024) | TGRS Research Map | TGRS