RNAtango: Analysing and comparing RNA 3D structures via torsional angles

RNA molecules, essential for viruses and living organisms, derive their pivotal functions from intricate 3D structures. To understand these structures, one can analyze torsion and pseudo-torsion angles, which describe rotations around bonds, whether real or virtual, thus capturing the RNA conformational flexibility. Such an analysis has been made possible by RNAtango, a web server introduced in this paper, that provides a trigonometric perspective on RNA 3D structures, giving insights into the variability of examined models and their alignment with reference targets. RNAtango offers comprehensive tools for calculating torsion and pseudo-torsion angles, generating angle statistics, comparing RNA structures based on backbone torsions, and assessing local and global structural similarities using trigonometric functions and angle measures. The system operates in three scenarios: single model analysis, model-versus-target comparison, and model-versus-model comparison, with results output in text and graphical formats. Compatible with all modern web browsers, RNAtango is accessible freely along with the source code. It supports researchers in accurately assessing structural similarities, which contributes to the precision and efficiency of RNA modeling.

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Publication Details

Journal
PLoS Computational Biology
Published
2024-10-07
DOI
https://doi.org/10.1371/journal.pcbi.1012500
Citations
9
Primary Topic
RNA and protein synthesis mechanisms
Type
article
Field-Weighted Citation Impact
2.10

Funders

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article

RNAtango: Analysing and comparing RNA 3D structures via torsional angles

Marta Szachniuk, Bartosz Adamczyk, Tomasz Żok, Marta Mackowiak
9 citations
PLoS Computational Biology
RNA and protein synthesis mechanisms
2.10
article

RNAtango: Analysing and comparing RNA 3D structures via torsional angles

Marta Szachniuk, Bartosz Adamczyk, Tomasz Żok, Marta Mackowiak
article en
9 citations

Abstract

RNA molecules, essential for viruses and living organisms, derive their pivotal functions from intricate 3D structures. To understand these structures, one can analyze torsion and pseudo-torsion angles, which describe rotations around bonds, whether real or virtual, thus capturing the RNA conformational flexibility. Such an analysis has been made possible by RNAtango, a web server introduced in this paper, that provides a trigonometric perspective on RNA 3D structures, giving insights into the variability of examined models and their alignment with reference targets. RNAtango offers comprehensive tools for calculating torsion and pseudo-torsion angles, generating angle statistics, comparing RNA structures based on backbone torsions, and assessing local and global structural similarities using trigonometric functions and angle measures. The system operates in three scenarios: single model analysis, model-versus-target comparison, and model-versus-model comparison, with results output in text and graphical formats. Compatible with all modern web browsers, RNAtango is accessible freely along with the source code. It supports researchers in accurately assessing structural similarities, which contributes to the precision and efficiency of RNA modeling.

PLoS Computational BiologyVol. 20(10)
Institute of Bioorganic Chemistry, Polish Academy of Sciences (PL), Poznań University of Technology (PL)
Politechnika Poznańska, Instytut Chemii Bioorganicznej, Polskiej Akademii Nauk
Openalex Percentile: Top 12%
RNA and protein synthesis mechanisms
2.10
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RNAtango: Analysing and comparing RNA 3D structures via torsional angles — Marta Szachniuk, Bartosz Adamczyk, et al. · PLoS Computational Biology (2024) | TGRS Research Map | TGRS