GABA promotes peroxisome proliferation in <scp><i>Triticum monococcum</i></scp> leaves

Although peroxisomes are integral for both primary and secondary metabolism, how developmental changes affect activity of peroxisomes remains poorly understood. Here, we used published RNA-seq data to analyze the expression patterns of genes encoding 21 peroxisome metabolic pathways at successive developmental stages of <i>Zea mays</i> and <i>Oryza sativa</i>. Photorespiration was the most represented pathway in adult leaf relative to the juvenile stages. Components of reactive oxygen species (ROS)/reactive nitrogen species (RNS) metabolism, NADPH regeneration, and catabolism of polyamines were also enriched at later stages of leaf differentiation. The most commonly upregulated gene in differentiated leaves across all datasets of both species was <i>BETAINE ALANINE DEHYDROGENASE</i> (<i>BADH</i>). <i>BADH</i> functions in catabolism of polyamines where it converts 4-aminobutyraldehyde (ABAL) to 4-aminobutyrate (GABA). We tested the outcome of RNA-seq analysis by qRT-PCR in developing <i>Triticum monococcum</i> ssp. <i>monococcum</i> (Einkorn) seedlings. Consistent with the outcomes of RNA-seq analysis, transcription of <i>BADH</i> and <i>CATALASE3</i> (<i>CAT3</i>) were upregulated in older seedlings. CAT3 is an essential peroxisome biogenesis factor and a key enzyme of ROS homeostasis. Furthermore, exogenous application of GABA resulted in higher peroxisome abundance and transcriptional upregulation of <i>BADH</i> and a gene encoding another peroxisome biogenesis factor responsible for peroxisome fission, <i>PEROXIN11C</i> (<i>PEX11C</i>), in leaves. We propose that GABA contributes to regulation of peroxisome fission machinery during leaf differentiation.

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Publication Details

Journal
Plant Direct
Published
2024-10-01
DOI
https://doi.org/10.1002/pld3.70007
Citations
2
Primary Topic
Peroxisome Proliferator-Activated Receptors
Type
article
Field-Weighted Citation Impact
0.47

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article

GABA promotes peroxisome proliferation in Triticum monococcum leaves

Andrei Smertenko, Taras Nazarov, Ercan Selçuk Ünlü, Yunus Şahin et al.
2 citations
Plant Direct
Peroxisome Proliferator-Activated Receptors
0.47
article

GABA promotes peroxisome proliferation in Triticum monococcum leaves

Andrei Smertenko, Taras Nazarov, Ercan Selçuk Ünlü, Yunus Şahin, Nusret Zencrici
article en
2 citations

Abstract

Although peroxisomes are integral for both primary and secondary metabolism, how developmental changes affect activity of peroxisomes remains poorly understood. Here, we used published RNA-seq data to analyze the expression patterns of genes encoding 21 peroxisome metabolic pathways at successive developmental stages of <i>Zea mays</i> and <i>Oryza sativa</i>. Photorespiration was the most represented pathway in adult leaf relative to the juvenile stages. Components of reactive oxygen species (ROS)/reactive nitrogen species (RNS) metabolism, NADPH regeneration, and catabolism of polyamines were also enriched at later stages of leaf differentiation. The most commonly upregulated gene in differentiated leaves across all datasets of both species was <i>BETAINE ALANINE DEHYDROGENASE</i> (<i>BADH</i>). <i>BADH</i> functions in catabolism of polyamines where it converts 4-aminobutyraldehyde (ABAL) to 4-aminobutyrate (GABA). We tested the outcome of RNA-seq analysis by qRT-PCR in developing <i>Triticum monococcum</i> ssp. <i>monococcum</i> (Einkorn) seedlings. Consistent with the outcomes of RNA-seq analysis, transcription of <i>BADH</i> and <i>CATALASE3</i> (<i>CAT3</i>) were upregulated in older seedlings. CAT3 is an essential peroxisome biogenesis factor and a key enzyme of ROS homeostasis. Furthermore, exogenous application of GABA resulted in higher peroxisome abundance and transcriptional upregulation of <i>BADH</i> and a gene encoding another peroxisome biogenesis factor responsible for peroxisome fission, <i>PEROXIN11C</i> (<i>PEX11C</i>), in leaves. We propose that GABA contributes to regulation of peroxisome fission machinery during leaf differentiation.

Plant DirectVol. 8(10)
Washington State University (US), Bolu Abant İzzet Baysal University (TR)
U.S. Department of Agriculture, Washington Grain Commission, Abant Izzet Baysal Üniversitesi, Türkiye Bilimsel ve Teknolojik Araştırma Kurumu, National Institute of Food and Agriculture
Life in Land
Openalex Percentile: Top 35%
Peroxisome Proliferator-Activated Receptors
0.47
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