DNA BARCODING OF THE GENUS TULIPA (LILIACEAE) IN KAZAKHSTAN

DNA barcoding is a reliable and effective tool for analyzing genetic and species diversity. Three plastid genetic markers (rbcL, psbA-trnH, matK) and one nuclear marker (ITS) were amplified with universal primers for species diversity and phylogenetic analysis of eight species including T. greigii, T. kaufmanniana, T. turkestanica, T. bifloriformis, T. patens, T. dubia, T. alberti, T. schrenkii across subgenera Tulipa and Eriostemones in Kazakhstan. DNA samples were obtained from fresh leaves of plants collected from various protected areas of Kazakhstan, and subsequently subjected to PCR, sequencing and deep phylogenetic analysis using Bayesian models for calculating posterior probabilities. Phylogenetic trees generated based on data obtained from individual markers accurately divided the samples into clades representing the subgenera Eriostemones and Tulipa. The ITS marker gave the most reliable results, followed by matK and rbcL; psbA-trnH was the least informative. These finding highlight the importance of using DNA-barcoding markers for comprehensive phylogenetic analysis, and contribute to understanding the genetic diversity and conservation of the Tulipa genus in Kazakhstan.

Authors

Publication Details

Journal
Eurasian journal of applied biotechnology
Published
2024-10-03
DOI
https://doi.org/10.11134/btp.3.2024.6
Primary Topic
Botany and Plant Ecology Studies
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

DNA BARCODING OF THE GENUS TULIPA (LILIACEAE) IN KAZAKHSTAN

S.A. Manabayeva, А.К. Kakanay, Maxim Sutula
Eurasian journal of applied biotechnology
Botany and Plant Ecology Studies
article

DNA BARCODING OF THE GENUS TULIPA (LILIACEAE) IN KAZAKHSTAN

S.A. Manabayeva, А.К. Kakanay, Maxim Sutula
article en

Abstract

DNA barcoding is a reliable and effective tool for analyzing genetic and species diversity. Three plastid genetic markers (rbcL, psbA-trnH, matK) and one nuclear marker (ITS) were amplified with universal primers for species diversity and phylogenetic analysis of eight species including T. greigii, T. kaufmanniana, T. turkestanica, T. bifloriformis, T. patens, T. dubia, T. alberti, T. schrenkii across subgenera Tulipa and Eriostemones in Kazakhstan. DNA samples were obtained from fresh leaves of plants collected from various protected areas of Kazakhstan, and subsequently subjected to PCR, sequencing and deep phylogenetic analysis using Bayesian models for calculating posterior probabilities. Phylogenetic trees generated based on data obtained from individual markers accurately divided the samples into clades representing the subgenera Eriostemones and Tulipa. The ITS marker gave the most reliable results, followed by matK and rbcL; psbA-trnH was the least informative. These finding highlight the importance of using DNA-barcoding markers for comprehensive phylogenetic analysis, and contribute to understanding the genetic diversity and conservation of the Tulipa genus in Kazakhstan.

Eurasian journal of applied biotechnology(3)
Life in Land
Openalex Percentile: Top 91%
Botany and Plant Ecology Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.