A High-Quality Genome Resource for the Oak Wilt Pathogen <i>Bretziella fagacearum</i>

Bretziella fagacearum is a destructive vascular wilt fungal pathogen affecting oaks in the United States and Canada. The epidemiology of oak wilt varies across different geographical locations, indicating the need to investigate the population dynamics of B. fagacearum to discern potential differences in its genotypes using genomic tools. A good-quality genome of B. fagacearum is crucial as a reference for population genetics studies. Here, we report a high-quality genome of B. fagacearum isolate C519. The genome assembly consists of nine scaffolds, corresponding to the nine chromosomes, totaling 27,072,536 bp with a GC content of 47.29%. It is predicted to encode 7,554 proteins, which are annotated using RNA sequencing data from the same isolate. The circular mitochondrial genome consists of a chromosome of 174,403 bp with a GC content of 28.59% and contains 54 open reading frames, including 14 core genes, 28 tRNAs, 4 rRNAs, and 8 hypothetical proteins. The reference genome can enhance the understanding of molecular epidemiology and biology of B. fagacearum, aiding in identifying genetic variations and pathogen–host interactions and developing diagnostic tools and disease management strategies. [Formula: see text] The author(s) have dedicated the work to the public domain under the Creative Commons CC0 “No Rights Reserved” license by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law, 2025.

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Publication Details

Journal
PhytoFrontiers™
Published
2024-10-03
DOI
https://doi.org/10.1094/phytofr-07-24-0080-a
Citations
2
Primary Topic
Plant Pathogens and Fungal Diseases
Type
article
Field-Weighted Citation Impact
0.65
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article

A High-Quality Genome Resource for the Oak Wilt Pathogen Bretziella fagacearum

Vivian Ng, Igor V. Grigoriev, Emily Savage, Anna Lipzen et al.
2 citations
PhytoFrontiers™
Plant Pathogens and Fungal Diseases
0.65
article

A High-Quality Genome Resource for the Oak Wilt Pathogen Bretziella fagacearum

Vivian Ng, Igor V. Grigoriev, Emily Savage, Anna Lipzen, Timothy D. Miles, Karandeep Chahal, Juying Yan, Steven Ahrendt, Monique L. Sakalidis, T. C. Harrington, C. Medina-Mora, Mohit Mahey, Maxim Koriabine, Eric L. Patterson, Robert Riley
article en
2 citations

Abstract

Bretziella fagacearum is a destructive vascular wilt fungal pathogen affecting oaks in the United States and Canada. The epidemiology of oak wilt varies across different geographical locations, indicating the need to investigate the population dynamics of B. fagacearum to discern potential differences in its genotypes using genomic tools. A good-quality genome of B. fagacearum is crucial as a reference for population genetics studies. Here, we report a high-quality genome of B. fagacearum isolate C519. The genome assembly consists of nine scaffolds, corresponding to the nine chromosomes, totaling 27,072,536 bp with a GC content of 47.29%. It is predicted to encode 7,554 proteins, which are annotated using RNA sequencing data from the same isolate. The circular mitochondrial genome consists of a chromosome of 174,403 bp with a GC content of 28.59% and contains 54 open reading frames, including 14 core genes, 28 tRNAs, 4 rRNAs, and 8 hypothetical proteins. The reference genome can enhance the understanding of molecular epidemiology and biology of B. fagacearum, aiding in identifying genetic variations and pathogen–host interactions and developing diagnostic tools and disease management strategies. [Formula: see text] The author(s) have dedicated the work to the public domain under the Creative Commons CC0 “No Rights Reserved” license by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law, 2025.

PhytoFrontiers™Vol. 5(1)
Lawrence Berkeley National Laboratory (US), Iowa State University (US), Joint Genome Institute (US), Michigan United (US), Michigan State University (US), University of California, Berkeley (US)
Openalex Percentile: Top 32%
Plant Pathogens and Fungal Diseases
0.65
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