Environment-independent distribution of mutational effects emerges from microscopic epistasis

Predicting how new mutations alter phenotypes is difficult because mutational effects vary across genotypes and environments. Recently discovered global epistasis, in which the fitness effects of mutations scale with the fitness of the background genotype, can improve predictions, but how the environment modulates this scaling is unknown. We measured the fitness effects of ~100 insertion mutations in 42 strains of <i>Saccharomyces cerevisiae</i> in six laboratory environments and found that the global epistasis scaling is nearly invariant across environments. Instead, the environment tunes one global parameter, the background fitness at which most mutations switch sign. As a consequence, the distribution of mutational effects is predictable across genotypes and environments. Our results suggest that the effective dimensionality of genotype-to-phenotype maps across environments is surprisingly low.

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Publication Details

Journal
Science
Published
2024-10-03
DOI
https://doi.org/10.1126/science.adn0753
Citations
27
Primary Topic
Evolution and Genetic Dynamics
Type
article
Field-Weighted Citation Impact
14.86

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article

Environment-independent distribution of mutational effects emerges from microscopic epistasis

Sarah M. Ardell, Alena Martsul, Sergey Kryazhimskiy, Milo S. Johnson
27 citations
Science
Evolution and Genetic Dynamics
14.86
article

Environment-independent distribution of mutational effects emerges from microscopic epistasis

Sarah M. Ardell, Alena Martsul, Sergey Kryazhimskiy, Milo S. Johnson
article en
27 citations

Abstract

Predicting how new mutations alter phenotypes is difficult because mutational effects vary across genotypes and environments. Recently discovered global epistasis, in which the fitness effects of mutations scale with the fitness of the background genotype, can improve predictions, but how the environment modulates this scaling is unknown. We measured the fitness effects of ~100 insertion mutations in 42 strains of <i>Saccharomyces cerevisiae</i> in six laboratory environments and found that the global epistasis scaling is nearly invariant across environments. Instead, the environment tunes one global parameter, the background fitness at which most mutations switch sign. As a consequence, the distribution of mutational effects is predictable across genotypes and environments. Our results suggest that the effective dimensionality of genotype-to-phenotype maps across environments is surprisingly low.

ScienceVol. 386(6717)
Lawrence Berkeley National Laboratory (US), University of California San Diego (US), University of California, Berkeley (US)
National Science Foundation, Alfred P. Sloan Foundation, Hellman Foundation, National Institutes of Health, University of California, San Diego
Life in Land
Openalex Percentile: Top 1%
Evolution and Genetic Dynamics
14.86
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