Chromosome-level genome assembly of American sweetgum (Liquidambar styraciflua, Altingiaceae)

The deciduous American sweetgum (Liquidambar styraciflua, Altingiaceae) is a popular ornamental and economically valuable tree renowned for its sweet-smelling bark resin, abundant volatile substances, and spectacular fall leaf color. However, the absence of a reference genome hinders thorough investigations into the mechanisms underlying phenotypic variation, secondary metabolite synthesis and adaptation, both in this species and other Liquidambar members. In this study, we sequenced and constructed a chromosome-level assembly of the L. styraciflua genome, covering 662.48 Mb with a scaffold N50 of 39.54 Mb, by integrating PacBio, Illumina and chromosome conformation capture data. We identified 58.83% of the genome sequences as repetitive elements and 25,713 protein-coding genes, 97.28% of which were functionally annotated. The genome sequencing reads, assembly and annotation data have been deposited in publicly available repositories. This high-quality genome assembly provides valuable resources for further evolutionary and functional genomic studies in American sweetgum and other Liquidambar species.

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Publication Details

Journal
Scientific Data
Published
2024-10-03
DOI
https://doi.org/10.1038/s41597-024-03924-7
Citations
2
Primary Topic
Plant Taxonomy and Phylogenetics
Type
article
Field-Weighted Citation Impact
2.06

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article

Chromosome-level genome assembly of American sweetgum (Liquidambar styraciflua, Altingiaceae)

Yingxiong Qiu, Shi-Xiong Ding, Yazhen Ma
2 citations
Scientific Data
Plant Taxonomy and Phylogenetics
2.06
article

Chromosome-level genome assembly of American sweetgum (Liquidambar styraciflua, Altingiaceae)

Yingxiong Qiu, Shi-Xiong Ding, Yazhen Ma
article en
2 citations

Abstract

The deciduous American sweetgum (Liquidambar styraciflua, Altingiaceae) is a popular ornamental and economically valuable tree renowned for its sweet-smelling bark resin, abundant volatile substances, and spectacular fall leaf color. However, the absence of a reference genome hinders thorough investigations into the mechanisms underlying phenotypic variation, secondary metabolite synthesis and adaptation, both in this species and other Liquidambar members. In this study, we sequenced and constructed a chromosome-level assembly of the L. styraciflua genome, covering 662.48 Mb with a scaffold N50 of 39.54 Mb, by integrating PacBio, Illumina and chromosome conformation capture data. We identified 58.83% of the genome sequences as repetitive elements and 25,713 protein-coding genes, 97.28% of which were functionally annotated. The genome sequencing reads, assembly and annotation data have been deposited in publicly available repositories. This high-quality genome assembly provides valuable resources for further evolutionary and functional genomic studies in American sweetgum and other Liquidambar species.

Scientific DataVol. 11(1)
Chinese Academy of Sciences (CN), Wuhan Botanical Garden (CN), University of Chinese Academy of Sciences (CN)
National Natural Science Foundation of China
Zero hunger
Openalex Percentile: Top 12%
Plant Taxonomy and Phylogenetics
2.06
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Chromosome-level genome assembly of American sweetgum (Liquidambar styraciflua, Altingiaceae) — Yingxiong Qiu, Shi-Xiong Ding, et al. · Scientific Data (2024) | TGRS Research Map | TGRS