Prokaryotic communities profiling of Indonesian hot springs using long-read Oxford Nanopore sequencing

Water samples were taken from three hot springs of the Bali, Indonesia (i) Angseri, 8.362503 S, 115.133452 E; (ii) Banjar, 8.210270 S, 114.967063 E; and (iii) Batur, 8.228806 S, 115.404829 E. BioLit Genomic DNA Extraction Kit (SRL, Mumbai, India) was used to isolate DNA from water samples. The quantity and quality of the DNA were determined using a NanoDrop™ spectrophotometer and a Qubit fluorometer (Thermo Fisher Scientific, USA). The library was created using Oxford Nanopore Technology kits, and the sequencing was done using Oxford Nanopore's GridION platform. All sequencing data was obtained in FASTQ files and filtered using NanoFilt software. This dataset is valuable for searching novel bacteria diversity and their existence.

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Publication Details

Journal
BMC Research Notes
Published
2024-10-02
DOI
https://doi.org/10.1186/s13104-024-06941-2
Citations
2
Primary Topic
Microbial Community Ecology and Physiology
Type
article
Field-Weighted Citation Impact
0.92

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Prokaryotic communities profiling of Indonesian hot springs using long-read Oxford Nanopore sequencing

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article

Prokaryotic communities profiling of Indonesian hot springs using long-read Oxford Nanopore sequencing

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article en
2 citations

Abstract

Water samples were taken from three hot springs of the Bali, Indonesia (i) Angseri, 8.362503 S, 115.133452 E; (ii) Banjar, 8.210270 S, 114.967063 E; and (iii) Batur, 8.228806 S, 115.404829 E. BioLit Genomic DNA Extraction Kit (SRL, Mumbai, India) was used to isolate DNA from water samples. The quantity and quality of the DNA were determined using a NanoDrop™ spectrophotometer and a Qubit fluorometer (Thermo Fisher Scientific, USA). The library was created using Oxford Nanopore Technology kits, and the sequencing was done using Oxford Nanopore's GridION platform. All sequencing data was obtained in FASTQ files and filtered using NanoFilt software. This dataset is valuable for searching novel bacteria diversity and their existence.

BMC Research NotesVol. 17(1)
Veer Narmad South Gujarat University (IN), Udayana University (ID), National Pingtung University of Science and Technology (TW)
Universitas Udayana
Openalex Percentile: Top 22%
Microbial Community Ecology and Physiology
0.92
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