Prokaryotic communities profiling of Indonesian hot springs using long-read Oxford Nanopore sequencing
Water samples were taken from three hot springs of the Bali, Indonesia (i) Angseri, 8.362503 S, 115.133452 E; (ii) Banjar, 8.210270 S, 114.967063 E; and (iii) Batur, 8.228806 S, 115.404829 E. BioLit Genomic DNA Extraction Kit (SRL, Mumbai, India) was used to isolate DNA from water samples. The quantity and quality of the DNA were determined using a NanoDrop™ spectrophotometer and a Qubit fluorometer (Thermo Fisher Scientific, USA). The library was created using Oxford Nanopore Technology kits, and the sequencing was done using Oxford Nanopore's GridION platform. All sequencing data was obtained in FASTQ files and filtered using NanoFilt software. This dataset is valuable for searching novel bacteria diversity and their existence.
Authors
- Nilam Vaghamshi (ORCID: https://orcid.org/0000-0002-1161-9330)
- Ni Putu Ariantari (ORCID: https://orcid.org/0000-0001-9657-9958)
- I Nengah Wirajana (ORCID: https://orcid.org/0000-0001-9403-2342)
- Pravin Dudhagara (ORCID: https://orcid.org/0000-0002-4041-6751)
- Douglas J. H. Shyu (ORCID: https://orcid.org/0000-0001-9325-4920)
- Komal Antaliya (ORCID: https://orcid.org/0000-0002-4106-6298)
Institutions
- Veer Narmad South Gujarat University (IN)
- Udayana University (ID)
- National Pingtung University of Science and Technology (TW)
Publication Details
- Journal
- BMC Research Notes
- Published
- 2024-10-02
- DOI
- https://doi.org/10.1186/s13104-024-06941-2
- Citations
- 2
- Primary Topic
- Microbial Community Ecology and Physiology
- Type
- article
- Field-Weighted Citation Impact
- 0.92
Funders
- Universitas Udayana