Chromosome genome assembly and annotation of Adzuki Bean (Vigna angularis)

Adzuki bean (Vigna angularis) is a significant dietary legume crop that is prevalent in East Asia. It also holds traditional medicinal importance in China. In this study, we report a high-quality, chromosome-level genome assembly of adzuki bean obtained by employing Illumina short-read sequencing, PacBio long-read sequencing, and Hi-C technology. The assembly spans 447.8 Mb, encompassing 96.32% of the estimated genome, with contig and scaffold N50 values of 16.5 and 41.0 Mb, respectively. More than 98.2% of the 1,614 BUSCO genes were fully identified, and 25,939 genes were annotated, with 98.23% of them being functionally identifiable. Vigna angularis was estimated to diverge successively from Vigna unguiculata and Vigna radiata about 15.3 and 8.7 million years ago (Ma), respectively. This chromosome-level reference genome of Vigna angularis provides a robust foundation for exploring the functional genomics and genome evolution of adzuki bean, thereby facilitating advancements in molecular breeding of adzuki bean.

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Publication Details

Journal
Scientific Data
Published
2024-10-02
DOI
https://doi.org/10.1038/s41597-024-03911-y
Citations
3
Primary Topic
Agricultural pest management studies
Type
article
Field-Weighted Citation Impact
1.80

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article

Chromosome genome assembly and annotation of Adzuki Bean (Vigna angularis)

Wan Li, Zhiquan Yang, Hongtao Xiang, Fanglei He et al.
3 citations
Scientific Data
Agricultural pest management studies
1.80
article

Chromosome genome assembly and annotation of Adzuki Bean (Vigna angularis)

Wan Li, Zhiquan Yang, Hongtao Xiang, Fanglei He, Xiaoqing Zhang, Xueyang Wang, Chao Fang, Qi Liu
article en
3 citations

Abstract

Adzuki bean (Vigna angularis) is a significant dietary legume crop that is prevalent in East Asia. It also holds traditional medicinal importance in China. In this study, we report a high-quality, chromosome-level genome assembly of adzuki bean obtained by employing Illumina short-read sequencing, PacBio long-read sequencing, and Hi-C technology. The assembly spans 447.8 Mb, encompassing 96.32% of the estimated genome, with contig and scaffold N50 values of 16.5 and 41.0 Mb, respectively. More than 98.2% of the 1,614 BUSCO genes were fully identified, and 25,939 genes were annotated, with 98.23% of them being functionally identifiable. Vigna angularis was estimated to diverge successively from Vigna unguiculata and Vigna radiata about 15.3 and 8.7 million years ago (Ma), respectively. This chromosome-level reference genome of Vigna angularis provides a robust foundation for exploring the functional genomics and genome evolution of adzuki bean, thereby facilitating advancements in molecular breeding of adzuki bean.

Scientific DataVol. 11(1)
Yunnan Agricultural University (CN), Guangzhou University (CN), Suihua University (CN), Heilongjiang Provincial Academy of Agricultural Sciences (CN)
National Natural Science Foundation of China
Zero hunger
Openalex Percentile: Top 13%
Agricultural pest management studies
1.80
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Chromosome genome assembly and annotation of Adzuki Bean (Vigna angularis) — Wan Li, Zhiquan Yang, et al. · Scientific Data (2024) | TGRS Research Map | TGRS