Calibrating tumor growth and invasion parameters with spectral spatial analysis of cancer biopsy tissues

The reaction-diffusion equation is widely used in mathematical models of cancer. The calibration of model parameters based on limited clinical data is critical to using reaction-diffusion equation simulations for reliable predictions on a per-patient basis. Here, we focus on cell-level data as routinely available from tissue biopsies used for clinical cancer diagnosis. We analyze the spatial architecture in biopsy tissues stained with multiplex immunofluorescence. We derive a two-point correlation function and the corresponding spatial power spectral distribution. We show that this data-deduced power spectral distribution can fit the power spectrum of the solution of reaction-diffusion equations that can then identify patient-specific tumor growth and invasion rates. This approach allows the measurement of patient-specific critical tumor dynamical properties from routinely available biopsy material at a single snapshot in time.

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Publication Details

Journal
npj Systems Biology and Applications
Published
2024-10-02
DOI
https://doi.org/10.1038/s41540-024-00439-0
Citations
4
Primary Topic
Mathematical Biology Tumor Growth
Type
article
Field-Weighted Citation Impact
1.58

Funders

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article

Calibrating tumor growth and invasion parameters with spectral spatial analysis of cancer biopsy tissues

S. Pasetto, Heiko Enderling, Pirmin Schlicke, Robert A. Gatenby et al.
4 citations
npj Systems Biology and Applications
Mathematical Biology Tumor Growth
1.58
article

Calibrating tumor growth and invasion parameters with spectral spatial analysis of cancer biopsy tissues

S. Pasetto, Heiko Enderling, Pirmin Schlicke, Robert A. Gatenby, Marilin Rosa, Mohammad U. Zahid, Roberto Díaz, Michael E. Montejo
article en
4 citations

Abstract

The reaction-diffusion equation is widely used in mathematical models of cancer. The calibration of model parameters based on limited clinical data is critical to using reaction-diffusion equation simulations for reliable predictions on a per-patient basis. Here, we focus on cell-level data as routinely available from tissue biopsies used for clinical cancer diagnosis. We analyze the spatial architecture in biopsy tissues stained with multiplex immunofluorescence. We derive a two-point correlation function and the corresponding spatial power spectral distribution. We show that this data-deduced power spectral distribution can fit the power spectrum of the solution of reaction-diffusion equations that can then identify patient-specific tumor growth and invasion rates. This approach allows the measurement of patient-specific critical tumor dynamical properties from routinely available biopsy material at a single snapshot in time.

npj Systems Biology and ApplicationsVol. 10(1)
The University of Texas MD Anderson Cancer Center (US), Moffitt Cancer Center (US)
Moffitt Cancer Center, Jayne Koskinas Ted Giovanis Foundation for Health and Policy, National Institutes of Health, National Cancer Institute
Zero hunger
Openalex Percentile: Top 18%
Mathematical Biology Tumor Growth
1.58
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Calibrating tumor growth and invasion parameters with spectral spatial analysis of cancer biopsy tissues — S. Pasetto, Heiko Enderling, et al. · npj Systems Biology and Applications (2024) | TGRS Research Map | TGRS