Spatial interactions modulate tumor growth and immune infiltration

Direct observation of tumor-immune interactions is unlikely in tumors with currently available technology, but computational simulations based on clinical data can provide insight to test hypotheses. It is hypothesized that patterns of collagen evolve as a mechanism of immune escape, but the exact nature of immune-collagen interactions is poorly understood. Spatial data quantifying collagen fiber alignment in squamous cell carcinomas indicates that late-stage disease is associated with highly aligned fibers. Our computational modeling framework discriminates between two hypotheses: immune cell migration that moves (1) parallel or (2) perpendicular to collagen fiber orientation. The modeling recapitulates immune-extracellular matrix interactions where collagen patterns provide immune protection, leading to an emergent inverse relationship between disease stage and immune coverage. Here, computational modeling provides important mechanistic insights by defining a kernel cell-cell interaction function that considers a spectrum of local (cell-scale) to global (tumor-scale) spatial interactions. Short-range interaction kernels provide a mechanism for tumor cell survival under conditions with strong Allee effects, while asymmetric tumor-immune interaction kernels lead to poor immune response. Thus, the length scale of tumor-immune interaction kernels drives tumor growth and infiltration.

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Publication Details

Journal
npj Systems Biology and Applications
Published
2024-09-30
DOI
https://doi.org/10.1038/s41540-024-00438-1
Citations
11
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
2.57

Funders

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article

Spatial interactions modulate tumor growth and immune infiltration

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11 citations
npj Systems Biology and Applications
Single-cell and spatial transcriptomics
2.57
article

Spatial interactions modulate tumor growth and immune infiltration

Antonio L. Amelio, Christine H. Chung, Sharon Kartika, Rafael Bravo, Sadegh Marzban, Jeffrey West, Sonal Srivastava, Alexander R.A. Anderson, Rachel Safriel, Aidan Zarski
article en
11 citations

Abstract

Direct observation of tumor-immune interactions is unlikely in tumors with currently available technology, but computational simulations based on clinical data can provide insight to test hypotheses. It is hypothesized that patterns of collagen evolve as a mechanism of immune escape, but the exact nature of immune-collagen interactions is poorly understood. Spatial data quantifying collagen fiber alignment in squamous cell carcinomas indicates that late-stage disease is associated with highly aligned fibers. Our computational modeling framework discriminates between two hypotheses: immune cell migration that moves (1) parallel or (2) perpendicular to collagen fiber orientation. The modeling recapitulates immune-extracellular matrix interactions where collagen patterns provide immune protection, leading to an emergent inverse relationship between disease stage and immune coverage. Here, computational modeling provides important mechanistic insights by defining a kernel cell-cell interaction function that considers a spectrum of local (cell-scale) to global (tumor-scale) spatial interactions. Short-range interaction kernels provide a mechanism for tumor cell survival under conditions with strong Allee effects, while asymmetric tumor-immune interaction kernels lead to poor immune response. Thus, the length scale of tumor-immune interaction kernels drives tumor growth and infiltration.

npj Systems Biology and ApplicationsVol. 10(1)
Indian Institute of Science Education and Research Kolkata (IN), Moffitt Cancer Center (US)
Moffitt Cancer Center, National Cancer Institute
Zero hunger
Openalex Percentile: Top 10%
Single-cell and spatial transcriptomics
2.57
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