Machine learning optimized DriverDetect software for high precision prediction of deleterious mutations in human cancers

The detection of cancer-driving mutations is important for understanding cancer pathology and therapeutics development. Prediction tools have been created to streamline the computation process. However, most tools available have heterogeneous sensitivity or specificity. We built a machine learning-derived algorithm, DriverDetect that combines the outputs of seven pre-existing tools to improve the prediction of candidate driver cancer mutations. The algorithm was trained with cancer gene-specific mutation datasets of cancer patients to identify cancer drivers. DriverDetect performed better than the individual tools or their combinations in the validation test. It has the potential to incorporate future novel prediction algorithms and can be retrained with new datasets, offering an expanded application to pan-cancer analysis for cross-cancer study. (115 words).

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Publication Details

Journal
Scientific Reports
Published
2024-09-30
DOI
https://doi.org/10.1038/s41598-024-71422-2
Citations
3
Primary Topic
Cancer Genomics and Diagnostics
Type
article
Field-Weighted Citation Impact
0.86

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article

Machine learning optimized DriverDetect software for high precision prediction of deleterious mutations in human cancers

Kenneth Ban, Ee Sin Chen, Ulysses Tsz Fung Lam, Herrick Yu Kan Koh
3 citations
Scientific Reports
Cancer Genomics and Diagnostics
0.86
article

Machine learning optimized DriverDetect software for high precision prediction of deleterious mutations in human cancers

Kenneth Ban, Ee Sin Chen, Ulysses Tsz Fung Lam, Herrick Yu Kan Koh
article en
3 citations

Abstract

The detection of cancer-driving mutations is important for understanding cancer pathology and therapeutics development. Prediction tools have been created to streamline the computation process. However, most tools available have heterogeneous sensitivity or specificity. We built a machine learning-derived algorithm, DriverDetect that combines the outputs of seven pre-existing tools to improve the prediction of candidate driver cancer mutations. The algorithm was trained with cancer gene-specific mutation datasets of cancer patients to identify cancer drivers. DriverDetect performed better than the individual tools or their combinations in the validation test. It has the potential to incorporate future novel prediction algorithms and can be retrained with new datasets, offering an expanded application to pan-cancer analysis for cross-cancer study. (115 words).

Scientific ReportsVol. 14(1)
National University of Singapore (SG), National University Cancer Institute, Singapore (SG), National University Health System (SG)
Ministry of Education - Singapore, National University Health System
Openalex Percentile: Top 25%
Cancer Genomics and Diagnostics
0.86
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Machine learning optimized DriverDetect software for high precision prediction of deleterious mutations in human cancers — Kenneth Ban, Ee Sin Chen, et al. · Scientific Reports (2024) | TGRS Research Map | TGRS