PicoCam: High‐resolution 3D imaging of live animals and preserved specimens

Abstract The PicoCam system is a multi‐camera photogrammetry rig used for generating high‐resolution 3D models of animals in the field, or preserved specimens in laboratory or museum settings. The digital measurement of 3D models is increasingly useful for studying body shape. However, methods that capture sub‐millimetric detail often do so at the cost of portability and versatility; this system aims to bridge this gap. The PicoCam system employs 3D digital photogrammetry, a process that generates accurate, full‐colour, 3D models from sequences of photographs. By using six cameras and a rotating base, the system is able to capture multiple angles in rapid succession—a key advantage for both 3D‐imaging live specimens and efficiently scanning museum specimens. Through the use of macro lenses and high‐resolution camera sensors, this system can capture sub‐millimetric detail without sacrificing portability. In this study, we 3D imaged the bills of 19 species of hummingbirds using the PicoCam system and measured length, height, width, surface area and volume of their bills. We examined eight species in the field and 11 from the Burke Museum in Seattle. We chose Hummingbird bills as a model system, as their fine‐scale interspecific differences in 3D shape can have significant functional and behavioural implications, and could tell us more about how these traits predict habitat and resource use. The prospect of a common 3D‐imaging method for both museum and field use is compelling when documenting structures' shape within and among species. The PicoCam system is also valuable for quantifying the 3D shape of fine‐scale phenotypes (like hummingbird bills) that benefit from digital measurement, preservation, and improved accessibility. Finally, the PicoCam system allows ‘digital 3D collection’, by which the shape of biological structures in the field can be recorded and stored in a public database without the need to collect a specimen. This opens the door to studies in which multiple 3D image captures of the same individual across different time scales permit 3D shape/colour comparisons (e.g. seasonal, ontogenetic changes).

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Publication Details

Journal
Methods in Ecology and Evolution
Published
2024-09-20
DOI
https://doi.org/10.1111/2041-210x.14409
Citations
5
Primary Topic
Morphological variations and asymmetry
Type
article
Field-Weighted Citation Impact
5.06

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article

PicoCam: High‐resolution 3D imaging of live animals and preserved specimens

Duncan J. Irschick, Rosalee Elting, Alejandro Rico‐Guevara, Josh Medina et al.
5 citations
Methods in Ecology and Evolution
Morphological variations and asymmetry
5.06
article

PicoCam: High‐resolution 3D imaging of live animals and preserved specimens

Duncan J. Irschick, Rosalee Elting, Alejandro Rico‐Guevara, Josh Medina, David Cuban, Ana Melisa Fernandes, Lucas Mansfield, Kevin Epperly, Felipe Garzón‐Agudelo, Nora Lee
article en
5 citations

Abstract

Abstract The PicoCam system is a multi‐camera photogrammetry rig used for generating high‐resolution 3D models of animals in the field, or preserved specimens in laboratory or museum settings. The digital measurement of 3D models is increasingly useful for studying body shape. However, methods that capture sub‐millimetric detail often do so at the cost of portability and versatility; this system aims to bridge this gap. The PicoCam system employs 3D digital photogrammetry, a process that generates accurate, full‐colour, 3D models from sequences of photographs. By using six cameras and a rotating base, the system is able to capture multiple angles in rapid succession—a key advantage for both 3D‐imaging live specimens and efficiently scanning museum specimens. Through the use of macro lenses and high‐resolution camera sensors, this system can capture sub‐millimetric detail without sacrificing portability. In this study, we 3D imaged the bills of 19 species of hummingbirds using the PicoCam system and measured length, height, width, surface area and volume of their bills. We examined eight species in the field and 11 from the Burke Museum in Seattle. We chose Hummingbird bills as a model system, as their fine‐scale interspecific differences in 3D shape can have significant functional and behavioural implications, and could tell us more about how these traits predict habitat and resource use. The prospect of a common 3D‐imaging method for both museum and field use is compelling when documenting structures' shape within and among species. The PicoCam system is also valuable for quantifying the 3D shape of fine‐scale phenotypes (like hummingbird bills) that benefit from digital measurement, preservation, and improved accessibility. Finally, the PicoCam system allows ‘digital 3D collection’, by which the shape of biological structures in the field can be recorded and stored in a public database without the need to collect a specimen. This opens the door to studies in which multiple 3D image captures of the same individual across different time scales permit 3D shape/colour comparisons (e.g. seasonal, ontogenetic changes).

Methods in Ecology and EvolutionVol. 15(11)
University of Washington (US), University of Massachusetts Amherst (US), University of Cundinamarca (CO), Burke Museum of Natural History and Culture (US), Colibrí Gorriazul Research Center, University of Montana (US)
Washington Research Foundation, University of Washington, Burke Museum, University of Washington
Life in Land
Openalex Percentile: Top 4%
Morphological variations and asymmetry
5.06
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