A New Workflow for Sampling and Digitizing Increment Cores

Here we present a new workflow from taking increment cores in the field, storing and transporting them to the lab, to digitizing their tree rings for further analyses for subsequent dendroecological analyses. The procedure involves the use of new sample carriers for increment cores. These new Gärtner Schneider Core (GSC) holders are designed using three-dimensional (3D) modeling software and finally printed with a 3D printer. Using these mounts from the beginning in the field, the cores can directly be cut with a core microtome, and their surface can then be digitized without further rearrangement using a new high-resolution image-capturing system. They are thus available for direct analysis. This system allows digitizing tree rings from cores and disks, and also taking images from long micro sections (up to 40 cm) using transmitted light. This feature is of special interest for dendroecological and geomorphic applications to identify the onset of any disturbance in micro sections cut with a core-microtome.

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Publication Details

Journal
Journal of Visualized Experiments
Published
2024-09-27
DOI
https://doi.org/10.3791/67098
Citations
10
Primary Topic
Scientific Computing and Data Management
Type
article
Field-Weighted Citation Impact
10.51
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article

A New Workflow for Sampling and Digitizing Increment Cores

Paolo Cherubini, Holger Gärtner, Loïc Schneider
10 citations
Journal of Visualized Experiments
Scientific Computing and Data Management
10.51
article

A New Workflow for Sampling and Digitizing Increment Cores

Paolo Cherubini, Holger Gärtner, Loïc Schneider
article en
10 citations

Abstract

Here we present a new workflow from taking increment cores in the field, storing and transporting them to the lab, to digitizing their tree rings for further analyses for subsequent dendroecological analyses. The procedure involves the use of new sample carriers for increment cores. These new Gärtner Schneider Core (GSC) holders are designed using three-dimensional (3D) modeling software and finally printed with a 3D printer. Using these mounts from the beginning in the field, the cores can directly be cut with a core microtome, and their surface can then be digitized without further rearrangement using a new high-resolution image-capturing system. They are thus available for direct analysis. This system allows digitizing tree rings from cores and disks, and also taking images from long micro sections (up to 40 cm) using transmitted light. This feature is of special interest for dendroecological and geomorphic applications to identify the onset of any disturbance in micro sections cut with a core-microtome.

Journal of Visualized Experiments(211)
Swiss Federal Institute for Forest, Snow and Landscape Research (CH)
Openalex Percentile: Top 2%
Scientific Computing and Data Management
10.51
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