Phylogenetic analyses and pathogenic diversity of Meloidogyne graminicola of rice (cv. BRRI Dhan28) from different agro-ecological zones of Bangladesh

Rice root-knot caused by Meloidogyne graminicola is a major yield-limiting factor in all rice growing countries around the world, which is often ignored in Bangladesh due to its subtle and obscure above ground symptoms. The current study proposes a comprehensive diagnosis of rice root-knot nematode at the molecular level and analyzes the pathogenic diversity of M. graminicola population of different AEZs. Rice seedlings of a popular variety (BRRI Dhan28) showing galls in the roots were collected from thirty Agro-Ecological-Zones (AEZs) of Bangladesh. For molecular identification, nuclear DNA was collected from single second-stage juvenile and internal transcribed spacer (ITS) was used as a universal primer. Molecular identification and phylogenetic analyses revealed that all nematode populations of galled rice seedlings from different locations belong to M. graminicola. The nematode populations constitute six phylogenetic clades. Nematode population of phylogenetic clade II showed the highest no. of galls (178 ± 1.67), although galling index was higher and similar in clade I, clade-II, clade-III and clade-VI. The highest percent reduction in both vegetative and yield-contributing traits were recorded in clade-II. A negative correlation was found in galling incidence and all growth and yield parameters. Comparative hatching of M. graminicola from different locations reveals that the pathogenicity of M. graminicola depends on the genetic variability of the nematode population, but not on the hatched juveniles. It might be concluded that the rice root-knot nematodes (M. graminicola) are prevalent in all agro-ecological zones of Bangladesh, despite the most pathogenic groups being frequent in AEZ- 1, 6, 7, 10, 18, 19, 21 and appropriate management initiatives are therefore crucial for maximizing rice yield.