Machine learning predicts cuproptosis-related lncRNAs and survival in glioma patients

Gliomas are the most common tumor in the central nervous system in adults, with glioblastoma (GBM) representing the most malignant form, while low-grade glioma (LGG) is a less severe. The prognosis for glioma remains poor even after various treatments, such as chemotherapy and immunotherapy. Cuproptosis is a newly defined form of programmed cell death, distinct from ferroptosis and apoptosis, primarily caused by the accumulation of the copper within cells. In this study, we compared the difference between the expression of cuproptosis-related genes in GBM and LGG, respectively, and conducted further analysis on the enrichment pathways of the exclusive expressed cuproptosis-related mRNAs in GBM and LGG. We established two prediction models for survival status using xgboost and random forest algorithms and applied the ROSE algorithm to balance the dataset to improve model performance.

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Publication Details

Journal
Scientific Reports
Published
2024-09-27
DOI
https://doi.org/10.1038/s41598-024-72664-w
Citations
7
Primary Topic
Cancer-related molecular mechanisms research
Type
article
Field-Weighted Citation Impact
2.00
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article

Machine learning predicts cuproptosis-related lncRNAs and survival in glioma patients

Lilu Shu, Mengshan Gao, Shaocai Hao, Qin Li et al.
7 citations
Scientific Reports
Cancer-related molecular mechanisms research
2.00
article

Machine learning predicts cuproptosis-related lncRNAs and survival in glioma patients

Lilu Shu, Mengshan Gao, Shaocai Hao, Qin Li, Z. Peter Wang, Guangshan Hao
article en
7 citations

Abstract

Gliomas are the most common tumor in the central nervous system in adults, with glioblastoma (GBM) representing the most malignant form, while low-grade glioma (LGG) is a less severe. The prognosis for glioma remains poor even after various treatments, such as chemotherapy and immunotherapy. Cuproptosis is a newly defined form of programmed cell death, distinct from ferroptosis and apoptosis, primarily caused by the accumulation of the copper within cells. In this study, we compared the difference between the expression of cuproptosis-related genes in GBM and LGG, respectively, and conducted further analysis on the enrichment pathways of the exclusive expressed cuproptosis-related mRNAs in GBM and LGG. We established two prediction models for survival status using xgboost and random forest algorithms and applied the ROSE algorithm to balance the dataset to improve model performance.

Scientific ReportsVol. 14(1)
Guangdong Medical College (CN), Dongguan People’s Hospital (CN), Ningxia Medical University (CN), Zhejiang Academy of Medical Sciences (CN)
Zero hunger
Openalex Percentile: Top 13%
Cancer-related molecular mechanisms research
2.00
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