Actin like 6A is a prognostic biomarker and associated with immune cell infiltration in cancers

To investigate the role of Actin like 6 A (ACTL6A) in cancer and explore the potential mechanism of its function. Differential expression of ACTL6A was analyzed using Oncomine and TIMER database. Then, we downloaded data sets from TCGA database. The correlation between ACTL6A expression and survival in pan-cancer were analyzed by “survival”, “survminer” R package and PrognoScan database. STRING (v 11.0) and stringAPP for Cytoscape v3.7.2 were used to predict ACTL6A associated genes. Copy number and methylation alterations of ACTL6A were analyzed using cBioPortal and GSCALite. Transcription factors were downloaded from The Human Transcription Factors Database and analyzed using “limma” R package, JASPAR and PROMO database. Correlations analysis between ACTL6A and immune cells were performed using TIMER and GEPIA database. In our studies, we found that ACTL6A was widely upregulated in cancers, which might be attributed to its gene amplifications. Moreover, ACTL6A might regulated by transcription factors (TFs), including E2F1, YY1, CDX2 and HOXD10. In addition, high ACTL6A expression was associated with poor prognosis in most cancers. Meanwhile, ACTL6A was associated with the infiltration of immune cells, especially in liver hepatocellular carcinoma and brain lower grade glioma. Amplification of ACTL6A is correlated with poor prognosis and contribute to immune cells infiltration in LIHC and LGG, which may provide immune-related therapeutic targets to guide clinical strategies.

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Publication Details

Journal
Discover Oncology
Published
2024-09-27
DOI
https://doi.org/10.1007/s12672-024-01388-0
Citations
6
Primary Topic
Cancer Immunotherapy and Biomarkers
Type
article
Field-Weighted Citation Impact
1.70

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article

Actin like 6A is a prognostic biomarker and associated with immune cell infiltration in cancers

Guan-nan Jin, Yi He, Ganxun Li, Zeyang Ding et al.
6 citations
Discover Oncology
Cancer Immunotherapy and Biomarkers
1.70
article

Actin like 6A is a prognostic biomarker and associated with immune cell infiltration in cancers

Guan-nan Jin, Yi He, Ganxun Li, Zeyang Ding, Xiaoping Chen, Zeyu Chen, Yu Wu, Bixiang Zhang, Bin Mei, Ning Cai
article en
6 citations

Abstract

To investigate the role of Actin like 6 A (ACTL6A) in cancer and explore the potential mechanism of its function. Differential expression of ACTL6A was analyzed using Oncomine and TIMER database. Then, we downloaded data sets from TCGA database. The correlation between ACTL6A expression and survival in pan-cancer were analyzed by “survival”, “survminer” R package and PrognoScan database. STRING (v 11.0) and stringAPP for Cytoscape v3.7.2 were used to predict ACTL6A associated genes. Copy number and methylation alterations of ACTL6A were analyzed using cBioPortal and GSCALite. Transcription factors were downloaded from The Human Transcription Factors Database and analyzed using “limma” R package, JASPAR and PROMO database. Correlations analysis between ACTL6A and immune cells were performed using TIMER and GEPIA database. In our studies, we found that ACTL6A was widely upregulated in cancers, which might be attributed to its gene amplifications. Moreover, ACTL6A might regulated by transcription factors (TFs), including E2F1, YY1, CDX2 and HOXD10. In addition, high ACTL6A expression was associated with poor prognosis in most cancers. Meanwhile, ACTL6A was associated with the infiltration of immune cells, especially in liver hepatocellular carcinoma and brain lower grade glioma. Amplification of ACTL6A is correlated with poor prognosis and contribute to immune cells infiltration in LIHC and LGG, which may provide immune-related therapeutic targets to guide clinical strategies.

Discover OncologyVol. 15(1)
Wuhan Union Hospital (CN), Tongji Hospital (CN), Union Hospital (CN), Huazhong University of Science and Technology (CN)
National Natural Science Foundation of China, Huazhong University of Science and Technology, Tongji University, National Key Research and Development Program of China, Tongji Medical College, Huazhong University of Science and Technology
Openalex Percentile: Top 13%
Cancer Immunotherapy and Biomarkers
1.70
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