LOCC: a novel visualization and scoring of cutoffs for continuous variables with hepatocellular carcinoma prognosis as an example

In summary, we present LOCC as a novel visualization tool for the analysis of gene expression in cancer, particularly for understanding and selecting cutoffs. Our findings suggest that LOCC scores, which effectively rank genes based on their prognostic potential, represent a more suitable approach than ROC curves and Cox proportional hazard for prognostic modeling and understanding in cancer gene expression analysis. LOCC holds promise as an invaluable tool for advancing precision medicine and furthering biomarker research. Further research regarding multivariable integration and validation will help LOCC reach its full potential and establish its utility across diverse cancer types and clinical settings.

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Publication Details

Journal
BMC Bioinformatics
Published
2024-09-27
DOI
https://doi.org/10.1186/s12859-024-05932-1
Primary Topic
Radiomics and Machine Learning in Medical Imaging
Type
article
Field-Weighted Citation Impact
0.00

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article

LOCC: a novel visualization and scoring of cutoffs for continuous variables with hepatocellular carcinoma prognosis as an example

George Luo, John J. Letterio, Toby Chen
BMC Bioinformatics
Radiomics and Machine Learning in Medical Imaging
article

LOCC: a novel visualization and scoring of cutoffs for continuous variables with hepatocellular carcinoma prognosis as an example

George Luo, John J. Letterio, Toby Chen
article en

Abstract

In summary, we present LOCC as a novel visualization tool for the analysis of gene expression in cancer, particularly for understanding and selecting cutoffs. Our findings suggest that LOCC scores, which effectively rank genes based on their prognostic potential, represent a more suitable approach than ROC curves and Cox proportional hazard for prognostic modeling and understanding in cancer gene expression analysis. LOCC holds promise as an invaluable tool for advancing precision medicine and furthering biomarker research. Further research regarding multivariable integration and validation will help LOCC reach its full potential and establish its utility across diverse cancer types and clinical settings.

BMC BioinformaticsVol. 25(1)
Cornell University (US), University of Michigan (US), Rainbow Babies & Children's Hospital (US), Case Comprehensive Cancer Center, Case Western Reserve University (US)
National Institute of General Medical Sciences
Openalex Percentile: Top 72%
Radiomics and Machine Learning in Medical Imaging
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LOCC: a novel visualization and scoring of cutoffs for continuous variables with hepatocellular carcinoma prognosis as an example — George Luo, John J. Letterio, et al. · BMC Bioinformatics (2024) | TGRS Research Map | TGRS