Exploring the programmability of autocatalytic chemical reaction networks

Networks of chemical reactions exhibit emergent properties under out-of-equilibrium conditions. Recent advances in systems chemistry demonstrate that networks with sufficient chemical complexity can be harnessed to emulate properties important for neuromorphic computing. In all examples, autocatalysis appears an essential element for facilitating the nonlinear integration of the input and self-regulatory abilities in the output. How this chemical analogue of a positive feedback mechanism can be controlled in a programmable manner is, however, unexplored. Here, we develop a strategy that uses metal ions (Ca<sup>2+</sup>, La<sup>3+</sup>, and Nd<sup>3+</sup>) to control the rate of a trypsin-catalysed autocatalytic reaction network. We demonstrate that this type of control allows for tuning the kinetics in the network, thereby changing the nature of the positive feedback. The simulations and experiments reveal that an input with one or more metal ions allow for temporal and history-dependent outputs that can be mapped onto a variety of mathematical functions.

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Publication Details

Journal
Nature Communications
Published
2024-09-27
DOI
https://doi.org/10.1038/s41467-024-52649-z
Citations
7
Primary Topic
Origins and Evolution of Life
Type
article
Field-Weighted Citation Impact
2.32

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article

Exploring the programmability of autocatalytic chemical reaction networks

Dmitrii V. Kriukov, Albert S. Y. Wong, Jurriaan Huskens
7 citations
Nature Communications
Origins and Evolution of Life
2.32
article

Exploring the programmability of autocatalytic chemical reaction networks

Dmitrii V. Kriukov, Albert S. Y. Wong, Jurriaan Huskens
article en
7 citations

Abstract

Networks of chemical reactions exhibit emergent properties under out-of-equilibrium conditions. Recent advances in systems chemistry demonstrate that networks with sufficient chemical complexity can be harnessed to emulate properties important for neuromorphic computing. In all examples, autocatalysis appears an essential element for facilitating the nonlinear integration of the input and self-regulatory abilities in the output. How this chemical analogue of a positive feedback mechanism can be controlled in a programmable manner is, however, unexplored. Here, we develop a strategy that uses metal ions (Ca<sup>2+</sup>, La<sup>3+</sup>, and Nd<sup>3+</sup>) to control the rate of a trypsin-catalysed autocatalytic reaction network. We demonstrate that this type of control allows for tuning the kinetics in the network, thereby changing the nature of the positive feedback. The simulations and experiments reveal that an input with one or more metal ions allow for temporal and history-dependent outputs that can be mapped onto a variety of mathematical functions.

Nature CommunicationsVol. 15(1)
Shanghai Center for Brain Science and Brain-Inspired Technology (CN), University of Twente (NL)
Nederlandse Organisatie voor Wetenschappelijk Onderzoek
Openalex Percentile: Top 12%
Origins and Evolution of Life
2.32
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Exploring the programmability of autocatalytic chemical reaction networks — Dmitrii V. Kriukov, Albert S. Y. Wong, et al. · Nature Communications (2024) | TGRS Research Map | TGRS